miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25959 3' -63.4 NC_005337.1 + 36499 0.7 0.36161
Target:  5'- cGCGGCCGcgGCgcucggcgcgacgauCCugaacgccgcgGGCGUCCCCGGCg- -3'
miRNA:   3'- -CGCCGGUa-CG---------------GG-----------CCGCAGGGGCUGag -5'
25959 3' -63.4 NC_005337.1 + 45187 0.71 0.308269
Target:  5'- gGCuGGCCGUGCCCGGgG-CgCUGucGCUCa -3'
miRNA:   3'- -CG-CCGGUACGGGCCgCaGgGGC--UGAG- -5'
25959 3' -63.4 NC_005337.1 + 58644 0.7 0.314423
Target:  5'- cGCGcCCAUcacgacgGCCCGcGCGUCCUCGGCg- -3'
miRNA:   3'- -CGCcGGUA-------CGGGC-CGCAGGGGCUGag -5'
25959 3' -63.4 NC_005337.1 + 122753 0.7 0.322071
Target:  5'- uGCGGCCAcccugcgcUGCCCGGCG-Ca-CGACg- -3'
miRNA:   3'- -CGCCGGU--------ACGGGCCGCaGggGCUGag -5'
25959 3' -63.4 NC_005337.1 + 87467 0.7 0.322071
Target:  5'- aUGGCCAgcgcGCCCucGGCGUCCCaGAC-Cg -3'
miRNA:   3'- cGCCGGUa---CGGG--CCGCAGGGgCUGaG- -5'
25959 3' -63.4 NC_005337.1 + 771 0.7 0.329143
Target:  5'- gGCGGCCAUGUgCuGCGcgCCgCCGACg- -3'
miRNA:   3'- -CGCCGGUACGgGcCGCa-GG-GGCUGag -5'
25959 3' -63.4 NC_005337.1 + 90940 0.7 0.336329
Target:  5'- gGCGGCCAgcGCgUCGGCGagCCCCGAg-- -3'
miRNA:   3'- -CGCCGGUa-CG-GGCCGCa-GGGGCUgag -5'
25959 3' -63.4 NC_005337.1 + 110213 0.7 0.358568
Target:  5'- gGCGGCCGcgGCCgCGGCcgcGUCgCCCGAg-- -3'
miRNA:   3'- -CGCCGGUa-CGG-GCCG---CAG-GGGCUgag -5'
25959 3' -63.4 NC_005337.1 + 44573 0.7 0.358568
Target:  5'- cGCGGCCGccGCgaUCGGCGUCUCCGcCa- -3'
miRNA:   3'- -CGCCGGUa-CG--GGCCGCAGGGGCuGag -5'
25959 3' -63.4 NC_005337.1 + 3326 0.71 0.301539
Target:  5'- aCGGCCAcG-CCGGCGUCCaggaaCGGCUg -3'
miRNA:   3'- cGCCGGUaCgGGCCGCAGGg----GCUGAg -5'
25959 3' -63.4 NC_005337.1 + 122673 0.71 0.294924
Target:  5'- gGUGGCCc-GCCgGGUGUgCCCCuGCUCg -3'
miRNA:   3'- -CGCCGGuaCGGgCCGCA-GGGGcUGAG- -5'
25959 3' -63.4 NC_005337.1 + 46000 0.71 0.288421
Target:  5'- uCGGCCAUGUCCuccgcGGCGcCCgCCGGCg- -3'
miRNA:   3'- cGCCGGUACGGG-----CCGCaGG-GGCUGag -5'
25959 3' -63.4 NC_005337.1 + 96269 0.81 0.060053
Target:  5'- aUGGCCAUG-CCGGCGUUCCCGGCg- -3'
miRNA:   3'- cGCCGGUACgGGCCGCAGGGGCUGag -5'
25959 3' -63.4 NC_005337.1 + 10700 0.73 0.208959
Target:  5'- gGCGGCCAggaGCUCGGgcuCGUCCuCCGAC-Cg -3'
miRNA:   3'- -CGCCGGUa--CGGGCC---GCAGG-GGCUGaG- -5'
25959 3' -63.4 NC_005337.1 + 96839 0.73 0.213946
Target:  5'- cGCaGCCGcgGCgUGGCGUucCCCCGGCUCc -3'
miRNA:   3'- -CGcCGGUa-CGgGCCGCA--GGGGCUGAG- -5'
25959 3' -63.4 NC_005337.1 + 123833 0.73 0.219034
Target:  5'- gGCGGCUccGuCCCGGCGUUCgCGGCg- -3'
miRNA:   3'- -CGCCGGuaC-GGGCCGCAGGgGCUGag -5'
25959 3' -63.4 NC_005337.1 + 54148 0.73 0.229521
Target:  5'- cGCGuGUCGcGCCCGGUGUCcacgaccgCCUGGCUCg -3'
miRNA:   3'- -CGC-CGGUaCGGGCCGCAG--------GGGCUGAG- -5'
25959 3' -63.4 NC_005337.1 + 52888 0.72 0.257597
Target:  5'- aGUGG-CGUGCCCGu--UCCCCGACUCc -3'
miRNA:   3'- -CGCCgGUACGGGCcgcAGGGGCUGAG- -5'
25959 3' -63.4 NC_005337.1 + 23079 0.72 0.265947
Target:  5'- gGCGGCCGUGCCCGGCaucgugcgcgcggugGUcagcaacuucaaCCCCGcCg- -3'
miRNA:   3'- -CGCCGGUACGGGCCG---------------CA------------GGGGCuGag -5'
25959 3' -63.4 NC_005337.1 + 95808 0.72 0.269592
Target:  5'- -gGGCCGcacUGCCCGGgGUCCauguCCGGCa- -3'
miRNA:   3'- cgCCGGU---ACGGGCCgCAGG----GGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.