miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25959 5' -52.1 NC_005337.1 + 55370 0.66 0.985512
Target:  5'- cCGuGAGCaucUGGACCuGCCagcgGAACGUGUa -3'
miRNA:   3'- -GC-CUUGac-ACUUGG-CGGa---CUUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 19059 0.66 0.985512
Target:  5'- uGGAGCUGUGccGCgGCCacAGCagGUGCg -3'
miRNA:   3'- gCCUUGACACu-UGgCGGacUUG--CACG- -5'
25959 5' -52.1 NC_005337.1 + 124020 0.66 0.985512
Target:  5'- gGGAGCUGcUGAugUGgCUGGccACcUGCa -3'
miRNA:   3'- gCCUUGAC-ACUugGCgGACU--UGcACG- -5'
25959 5' -52.1 NC_005337.1 + 116123 0.66 0.985336
Target:  5'- aGGAGCUcGUGGagcuGCgCGCCUGGgggccgaACGaGCg -3'
miRNA:   3'- gCCUUGA-CACU----UG-GCGGACU-------UGCaCG- -5'
25959 5' -52.1 NC_005337.1 + 101924 0.66 0.983676
Target:  5'- uGGucCUGgaGACCGuCCUGGACGagcUGCg -3'
miRNA:   3'- gCCuuGACacUUGGC-GGACUUGC---ACG- -5'
25959 5' -52.1 NC_005337.1 + 37353 0.66 0.983676
Target:  5'- gCGGGGCUGUuu-CCGCCgGAGuCGUa- -3'
miRNA:   3'- -GCCUUGACAcuuGGCGGaCUU-GCAcg -5'
25959 5' -52.1 NC_005337.1 + 68202 0.66 0.983676
Target:  5'- cCGGGggcgccGCUGcGGGcCCGCCUG-ACG-GCg -3'
miRNA:   3'- -GCCU------UGACaCUU-GGCGGACuUGCaCG- -5'
25959 5' -52.1 NC_005337.1 + 103994 0.66 0.983676
Target:  5'- aCGGc---GUGGugCGCCUGAACGc-- -3'
miRNA:   3'- -GCCuugaCACUugGCGGACUUGCacg -5'
25959 5' -52.1 NC_005337.1 + 13851 0.66 0.983676
Target:  5'- gGGGGC-GUGAGcuCCGCCUccgGGACGgucguggGCa -3'
miRNA:   3'- gCCUUGaCACUU--GGCGGA---CUUGCa------CG- -5'
25959 5' -52.1 NC_005337.1 + 101538 0.66 0.983676
Target:  5'- aCGGAACggagGAGCUgcagaGCCUcAGCGUGUc -3'
miRNA:   3'- -GCCUUGaca-CUUGG-----CGGAcUUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 22048 0.66 0.983093
Target:  5'- cCGGAagaccgaguuccgcGCgGUGAAgCGCCUGGcCGUacuGCg -3'
miRNA:   3'- -GCCU--------------UGaCACUUgGCGGACUuGCA---CG- -5'
25959 5' -52.1 NC_005337.1 + 99034 0.66 0.981669
Target:  5'- aGGcGCUG-GAcgccagguacGCCGaCCUGAccuuCGUGCg -3'
miRNA:   3'- gCCuUGACaCU----------UGGC-GGACUu---GCACG- -5'
25959 5' -52.1 NC_005337.1 + 69925 0.66 0.979483
Target:  5'- uGGAcacgGCUGUGuACCGCC---GCG-GCg -3'
miRNA:   3'- gCCU----UGACACuUGGCGGacuUGCaCG- -5'
25959 5' -52.1 NC_005337.1 + 36002 0.66 0.979483
Target:  5'- aGGaAGCggGUGAccACCGUCgUGGACG-GCg -3'
miRNA:   3'- gCC-UUGa-CACU--UGGCGG-ACUUGCaCG- -5'
25959 5' -52.1 NC_005337.1 + 102158 0.66 0.979254
Target:  5'- uGGAcacGCUG-GAcaugcgcGCCGCCaUGuacAACGUGCu -3'
miRNA:   3'- gCCU---UGACaCU-------UGGCGG-AC---UUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 72844 0.66 0.978791
Target:  5'- aGGGcgucuucuccugcgGCUGUccgcGAACCuG-CUGGACGUGCa -3'
miRNA:   3'- gCCU--------------UGACA----CUUGG-CgGACUUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 101745 0.66 0.977108
Target:  5'- gGGAGCUGagccacGAGguCCuCCUGGAgGUGCa -3'
miRNA:   3'- gCCUUGACa-----CUU--GGcGGACUUgCACG- -5'
25959 5' -52.1 NC_005337.1 + 49735 0.66 0.977108
Target:  5'- gCGGGACgccgGacacGGugCGCCgguGCGUGCg -3'
miRNA:   3'- -GCCUUGa---Ca---CUugGCGGacuUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 19458 0.66 0.97559
Target:  5'- gGGAGCUcGUgucgcaGAGCCGCUgauacaucaugcccgUGGGCGUGg -3'
miRNA:   3'- gCCUUGA-CA------CUUGGCGG---------------ACUUGCACg -5'
25959 5' -52.1 NC_005337.1 + 24066 0.66 0.974538
Target:  5'- uGGAgaaGCUGUcgcuGACCGCCgaGGACGUcGUg -3'
miRNA:   3'- gCCU---UGACAc---UUGGCGGa-CUUGCA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.