miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25959 5' -52.1 NC_005337.1 + 126173 1.13 0.003844
Target:  5'- cCGGAACUGUGAACCGCCUGAACGUGCu -3'
miRNA:   3'- -GCCUUGACACUUGGCGGACUUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 3441 0.73 0.74071
Target:  5'- -cGAGCUcuaUGAGCCGCCUGAucACGgcgGCa -3'
miRNA:   3'- gcCUUGAc--ACUUGGCGGACU--UGCa--CG- -5'
25959 5' -52.1 NC_005337.1 + 106684 0.73 0.760504
Target:  5'- aGGAGCUGUGccUCGUggcGAGCGUGCa -3'
miRNA:   3'- gCCUUGACACuuGGCGga-CUUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 115967 0.72 0.807717
Target:  5'- uGGAcgcGCUGUuccGCUGCCUGuuCGUGCa -3'
miRNA:   3'- gCCU---UGACAcu-UGGCGGACuuGCACG- -5'
25959 5' -52.1 NC_005337.1 + 69229 0.72 0.816693
Target:  5'- -aGAAC-GUGcgcGCgCGCCUGGACGUGCc -3'
miRNA:   3'- gcCUUGaCACu--UG-GCGGACUUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 117347 0.72 0.816693
Target:  5'- aCGGccAAC-GUcGGCCGCgUGGACGUGCg -3'
miRNA:   3'- -GCC--UUGaCAcUUGGCGgACUUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 10450 0.72 0.816693
Target:  5'- cCGGGACg--GAGCCGCCcagGAacACGUGg -3'
miRNA:   3'- -GCCUUGacaCUUGGCGGa--CU--UGCACg -5'
25959 5' -52.1 NC_005337.1 + 44427 0.72 0.816693
Target:  5'- cCGGAGCgccggGAGCCGCCgccggaGGACGUcgaGCg -3'
miRNA:   3'- -GCCUUGaca--CUUGGCGGa-----CUUGCA---CG- -5'
25959 5' -52.1 NC_005337.1 + 56143 0.71 0.834106
Target:  5'- ---cGCUcGUGAACCGCCUGcACGcGCu -3'
miRNA:   3'- gccuUGA-CACUUGGCGGACuUGCaCG- -5'
25959 5' -52.1 NC_005337.1 + 133075 0.71 0.834106
Target:  5'- gCGGcGCcgGUG-GCCGCCUGGAugcaggagaucCGUGCg -3'
miRNA:   3'- -GCCuUGa-CACuUGGCGGACUU-----------GCACG- -5'
25959 5' -52.1 NC_005337.1 + 104710 0.71 0.842525
Target:  5'- aGGAGCUGcUGuGCCaCCUGAGCagcgaguggGUGCa -3'
miRNA:   3'- gCCUUGAC-ACuUGGcGGACUUG---------CACG- -5'
25959 5' -52.1 NC_005337.1 + 92655 0.71 0.850743
Target:  5'- cCGGAACgagGUGcugcACUGCUUcGACGUGCu -3'
miRNA:   3'- -GCCUUGa--CACu---UGGCGGAcUUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 109517 0.71 0.850743
Target:  5'- aGGAAg-GUGAGCCGCCcGcGCG-GCg -3'
miRNA:   3'- gCCUUgaCACUUGGCGGaCuUGCaCG- -5'
25959 5' -52.1 NC_005337.1 + 11854 0.71 0.858752
Target:  5'- uGGAGaUG-GAGCCGCCcgUGAGCGagGCg -3'
miRNA:   3'- gCCUUgACaCUUGGCGG--ACUUGCa-CG- -5'
25959 5' -52.1 NC_005337.1 + 37103 0.71 0.858752
Target:  5'- gCGGAAgUUGUcGGGggGCCUGAugGUGCa -3'
miRNA:   3'- -GCCUU-GACA-CUUggCGGACUugCACG- -5'
25959 5' -52.1 NC_005337.1 + 64281 0.71 0.866544
Target:  5'- cCGGAgcaACUGcucuucGACCGUCUGAGCGaGCg -3'
miRNA:   3'- -GCCU---UGACac----UUGGCGGACUUGCaCG- -5'
25959 5' -52.1 NC_005337.1 + 45027 0.7 0.895432
Target:  5'- gGGAGC-GUGGACUGCCgc-ACGaUGCu -3'
miRNA:   3'- gCCUUGaCACUUGGCGGacuUGC-ACG- -5'
25959 5' -52.1 NC_005337.1 + 65517 0.7 0.895432
Target:  5'- uGGAGCUgGUGAACCuggUGcGCGUGCg -3'
miRNA:   3'- gCCUUGA-CACUUGGcggACuUGCACG- -5'
25959 5' -52.1 NC_005337.1 + 23430 0.7 0.902059
Target:  5'- cCGGAGaccgcggUGUGGagcaGCCGCCUGGGCGa-- -3'
miRNA:   3'- -GCCUUg------ACACU----UGGCGGACUUGCacg -5'
25959 5' -52.1 NC_005337.1 + 36624 0.69 0.907813
Target:  5'- gCGGAGCUugGUGAGCaccagcacgCGUCUGGACGUcccguccGCg -3'
miRNA:   3'- -GCCUUGA--CACUUG---------GCGGACUUGCA-------CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.