miRNA display CGI


Results 1 - 20 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 123207 0.66 0.896427
Target:  5'- uGCCAgGCGgGC-CAGGgcuUCGUCCUc -3'
miRNA:   3'- -CGGUgCGUgCGcGUCUauuAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 115558 0.66 0.896427
Target:  5'- cGCCA-GCGCGcCGCAGcuccUCGCCg- -3'
miRNA:   3'- -CGGUgCGUGC-GCGUCuauuAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 91324 0.66 0.882715
Target:  5'- gGCCACGguccccuugacCAUGCGCAGGUucUgGCCg- -3'
miRNA:   3'- -CGGUGC-----------GUGCGCGUCUAuuAgCGGga -5'
25960 3' -55.5 NC_005337.1 + 52231 0.66 0.88762
Target:  5'- gGCCGCGCucgacgccauuuccGCGaCGCu----GUCGCCCa -3'
miRNA:   3'- -CGGUGCG--------------UGC-GCGucuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 10385 0.66 0.880579
Target:  5'- gGCCACGCAgcuggugcucgggcUGUGgAGGUGcggcugCGCCCa -3'
miRNA:   3'- -CGGUGCGU--------------GCGCgUCUAUua----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 97696 0.66 0.889
Target:  5'- cGCCGCGCugGCggaccggcuagguGCGGAccUGGUCuUCCUc -3'
miRNA:   3'- -CGGUGCGugCG-------------CGUCU--AUUAGcGGGA- -5'
25960 3' -55.5 NC_005337.1 + 90310 0.66 0.889687
Target:  5'- cGCCGgGCGCGCcgccGUAGAUGGUgCGCg-- -3'
miRNA:   3'- -CGGUgCGUGCG----CGUCUAUUA-GCGgga -5'
25960 3' -55.5 NC_005337.1 + 1127 0.66 0.892411
Target:  5'- aGCCGCaGCACGCGCgcgaccagcuccgcgGGGaGcgCGCCg- -3'
miRNA:   3'- -CGGUG-CGUGCGCG---------------UCUaUuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 120430 0.66 0.889687
Target:  5'- aGCCG-GCAgGCgGCGGAcUGcgCGCCCc -3'
miRNA:   3'- -CGGUgCGUgCG-CGUCU-AUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 21358 0.66 0.889687
Target:  5'- --aGCGCGaacuugugUGCGCAGAUcagCGCCCa -3'
miRNA:   3'- cggUGCGU--------GCGCGUCUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 94792 0.66 0.896427
Target:  5'- aGCaGCGCGCGCGC-----GUCGCCg- -3'
miRNA:   3'- -CGgUGCGUGCGCGucuauUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 109380 0.66 0.896427
Target:  5'- aGgCGgGCACGCGCGGGUcugGcgUGCCg- -3'
miRNA:   3'- -CgGUgCGUGCGCGUCUA---UuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 128271 0.66 0.891734
Target:  5'- cGCCGCuGCACGCGgCGGucugcaacgcgcgCGCCUg -3'
miRNA:   3'- -CGGUG-CGUGCGC-GUCuauua--------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 8728 0.66 0.909192
Target:  5'- cCCACGucguccUugGCGCGGAUGucggCGCCg- -3'
miRNA:   3'- cGGUGC------GugCGCGUCUAUua--GCGGga -5'
25960 3' -55.5 NC_005337.1 + 110216 0.66 0.896427
Target:  5'- gGCCGCG-GC-CGCGGccgcGUCGCCCg -3'
miRNA:   3'- -CGGUGCgUGcGCGUCuau-UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 109016 0.66 0.896427
Target:  5'- cGCCGCGUugGCGgAGuUGAacUCGCg-- -3'
miRNA:   3'- -CGGUGCGugCGCgUCuAUU--AGCGgga -5'
25960 3' -55.5 NC_005337.1 + 4111 0.66 0.889687
Target:  5'- aCCGCGCGCGCGgAGA----CGCgCg -3'
miRNA:   3'- cGGUGCGUGCGCgUCUauuaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 20776 0.66 0.889687
Target:  5'- gGCCACGCGCuuCGCGGGgacggGcgUGCCg- -3'
miRNA:   3'- -CGGUGCGUGc-GCGUCUa----UuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 88331 0.66 0.889687
Target:  5'- cGCCACGCgcgccggcGCGCGCgAGAaGAcCGUCUUc -3'
miRNA:   3'- -CGGUGCG--------UGCGCG-UCUaUUaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 21426 0.66 0.896427
Target:  5'- gGCCGCGgccaGCuCGCGGAgcuUCGCCUc -3'
miRNA:   3'- -CGGUGCg---UGcGCGUCUauuAGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.