miRNA display CGI


Results 21 - 40 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 95386 0.66 0.908577
Target:  5'- gGCCGCGCgACGCGCgcgaacuccgagcAGAaccgcgCGUCCa -3'
miRNA:   3'- -CGGUGCG-UGCGCG-------------UCUauua--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 74934 0.66 0.909192
Target:  5'- cGCgCGCGCGgcCGCGCGGAUGcggUGCUg- -3'
miRNA:   3'- -CG-GUGCGU--GCGCGUCUAUua-GCGGga -5'
25960 3' -55.5 NC_005337.1 + 91324 0.66 0.882715
Target:  5'- gGCCACGguccccuugacCAUGCGCAGGUucUgGCCg- -3'
miRNA:   3'- -CGGUGC-----------GUGCGCGUCUAuuAgCGGga -5'
25960 3' -55.5 NC_005337.1 + 99656 0.66 0.90293
Target:  5'- cGgCAuCGC-CGCGCGGcUGGgcgCGCCCg -3'
miRNA:   3'- -CgGU-GCGuGCGCGUCuAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 21426 0.66 0.896427
Target:  5'- gGCCGCGgccaGCuCGCGGAgcuUCGCCUc -3'
miRNA:   3'- -CGGUGCg---UGcGCGUCUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 128271 0.66 0.891734
Target:  5'- cGCCGCuGCACGCGgCGGucugcaacgcgcgCGCCUg -3'
miRNA:   3'- -CGGUG-CGUGCGC-GUCuauua--------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 120430 0.66 0.889687
Target:  5'- aGCCG-GCAgGCgGCGGAcUGcgCGCCCc -3'
miRNA:   3'- -CGGUgCGUgCG-CGUCU-AUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 88331 0.66 0.889687
Target:  5'- cGCCACGCgcgccggcGCGCGCgAGAaGAcCGUCUUc -3'
miRNA:   3'- -CGGUGCG--------UGCGCG-UCUaUUaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 51701 0.66 0.90293
Target:  5'- aGUCugGCcugcgacggcgACGCGCuGAUGAUCGagcugCCUg -3'
miRNA:   3'- -CGGugCG-----------UGCGCGuCUAUUAGCg----GGA- -5'
25960 3' -55.5 NC_005337.1 + 65613 0.66 0.90293
Target:  5'- cGCUGCuGCACGCGCucaaccaccccaAGAUc--CGCCCc -3'
miRNA:   3'- -CGGUG-CGUGCGCG------------UCUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 102458 0.66 0.90293
Target:  5'- gGCCGaGCACGCcaaGCAGA-AGUC-CCCg -3'
miRNA:   3'- -CGGUgCGUGCG---CGUCUaUUAGcGGGa -5'
25960 3' -55.5 NC_005337.1 + 90310 0.66 0.889687
Target:  5'- cGCCGgGCGCGCcgccGUAGAUGGUgCGCg-- -3'
miRNA:   3'- -CGGUgCGUGCG----CGUCUAUUA-GCGgga -5'
25960 3' -55.5 NC_005337.1 + 4111 0.66 0.889687
Target:  5'- aCCGCGCGCGCGgAGA----CGCgCg -3'
miRNA:   3'- cGGUGCGUGCGCgUCUauuaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 97696 0.66 0.889
Target:  5'- cGCCGCGCugGCggaccggcuagguGCGGAccUGGUCuUCCUc -3'
miRNA:   3'- -CGGUGCGugCG-------------CGUCU--AUUAGcGGGA- -5'
25960 3' -55.5 NC_005337.1 + 10385 0.66 0.880579
Target:  5'- gGCCACGCAgcuggugcucgggcUGUGgAGGUGcggcugCGCCCa -3'
miRNA:   3'- -CGGUGCGU--------------GCGCgUCUAUua----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 7325 0.66 0.897088
Target:  5'- cGCaCACGuCGCGCGCGuucacguccgCGCCCg -3'
miRNA:   3'- -CG-GUGC-GUGCGCGUcuauua----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 64831 0.66 0.896427
Target:  5'- cCCAUGUGCGCGCGcGAgcuggCGCCg- -3'
miRNA:   3'- cGGUGCGUGCGCGU-CUauua-GCGGga -5'
25960 3' -55.5 NC_005337.1 + 21358 0.66 0.889687
Target:  5'- --aGCGCGaacuugugUGCGCAGAUcagCGCCCa -3'
miRNA:   3'- cggUGCGU--------GCGCGUCUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 20776 0.66 0.889687
Target:  5'- gGCCACGCGCuuCGCGGGgacggGcgUGCCg- -3'
miRNA:   3'- -CGGUGCGUGc-GCGUCUa----UuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 115558 0.66 0.896427
Target:  5'- cGCCA-GCGCGcCGCAGcuccUCGCCg- -3'
miRNA:   3'- -CGGUgCGUGC-GCGUCuauuAGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.