miRNA display CGI


Results 41 - 60 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 52231 0.66 0.88762
Target:  5'- gGCCGCGCucgacgccauuuccGCGaCGCu----GUCGCCCa -3'
miRNA:   3'- -CGGUGCG--------------UGC-GCGucuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 97696 0.66 0.889
Target:  5'- cGCCGCGCugGCggaccggcuagguGCGGAccUGGUCuUCCUc -3'
miRNA:   3'- -CGGUGCGugCG-------------CGUCU--AUUAGcGGGA- -5'
25960 3' -55.5 NC_005337.1 + 91324 0.66 0.882715
Target:  5'- gGCCACGguccccuugacCAUGCGCAGGUucUgGCCg- -3'
miRNA:   3'- -CGGUGC-----------GUGCGCGUCUAuuAgCGGga -5'
25960 3' -55.5 NC_005337.1 + 33405 0.66 0.909192
Target:  5'- uCCAUGCGCGUcaucgGCAcGGUGAgcgCGUCCa -3'
miRNA:   3'- cGGUGCGUGCG-----CGU-CUAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 39414 0.66 0.882715
Target:  5'- cGCUguuCGaCACGCGCGGg----CGCCCg -3'
miRNA:   3'- -CGGu--GC-GUGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 88331 0.66 0.889687
Target:  5'- cGCCACGCgcgccggcGCGCGCgAGAaGAcCGUCUUc -3'
miRNA:   3'- -CGGUGCG--------UGCGCG-UCUaUUaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 10385 0.66 0.880579
Target:  5'- gGCCACGCAgcuggugcucgggcUGUGgAGGUGcggcugCGCCCa -3'
miRNA:   3'- -CGGUGCGU--------------GCGCgUCUAUua----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 51701 0.66 0.90293
Target:  5'- aGUCugGCcugcgacggcgACGCGCuGAUGAUCGagcugCCUg -3'
miRNA:   3'- -CGGugCG-----------UGCGCGuCUAUUAGCg----GGA- -5'
25960 3' -55.5 NC_005337.1 + 102458 0.66 0.90293
Target:  5'- gGCCGaGCACGCcaaGCAGA-AGUC-CCCg -3'
miRNA:   3'- -CGGUgCGUGCG---CGUCUaUUAGcGGGa -5'
25960 3' -55.5 NC_005337.1 + 122373 0.66 0.90293
Target:  5'- cGCCACGCgcauguGCGUGCGcGA-GGUCGUgCUg -3'
miRNA:   3'- -CGGUGCG------UGCGCGU-CUaUUAGCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 65613 0.66 0.90293
Target:  5'- cGCUGCuGCACGCGCucaaccaccccaAGAUc--CGCCCc -3'
miRNA:   3'- -CGGUG-CGUGCGCG------------UCUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 7325 0.66 0.897088
Target:  5'- cGCaCACGuCGCGCGCGuucacguccgCGCCCg -3'
miRNA:   3'- -CG-GUGC-GUGCGCGUcuauua----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 99656 0.66 0.90293
Target:  5'- cGgCAuCGC-CGCGCGGcUGGgcgCGCCCg -3'
miRNA:   3'- -CgGU-GCGuGCGCGUCuAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 47798 0.66 0.90293
Target:  5'- uGCUGCGCACGUGCGaccccUCGCgCUu -3'
miRNA:   3'- -CGGUGCGUGCGCGUcuauuAGCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 128271 0.66 0.891734
Target:  5'- cGCCGCuGCACGCGgCGGucugcaacgcgcgCGCCUg -3'
miRNA:   3'- -CGGUG-CGUGCGC-GUCuauua--------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 1127 0.66 0.892411
Target:  5'- aGCCGCaGCACGCGCgcgaccagcuccgcgGGGaGcgCGCCg- -3'
miRNA:   3'- -CGGUG-CGUGCGCG---------------UCUaUuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 15860 0.66 0.896427
Target:  5'- cGCCcaugcucugcauGCGCgACGUGguGAUGAucaUCGCCa- -3'
miRNA:   3'- -CGG------------UGCG-UGCGCguCUAUU---AGCGGga -5'
25960 3' -55.5 NC_005337.1 + 64831 0.66 0.896427
Target:  5'- cCCAUGUGCGCGCGcGAgcuggCGCCg- -3'
miRNA:   3'- cGGUGCGUGCGCGU-CUauua-GCGGga -5'
25960 3' -55.5 NC_005337.1 + 110216 0.66 0.896427
Target:  5'- gGCCGCG-GC-CGCGGccgcGUCGCCCg -3'
miRNA:   3'- -CGGUGCgUGcGCGUCuau-UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 130758 0.66 0.909192
Target:  5'- gGCCuCGCAgguggacuuCGCGCAGAccUGggCGCCg- -3'
miRNA:   3'- -CGGuGCGU---------GCGCGUCU--AUuaGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.