miRNA display CGI


Results 61 - 80 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 127367 0.66 0.896427
Target:  5'- uGCUGCGCGCcgGCGCGGAcccgCGCgCg -3'
miRNA:   3'- -CGGUGCGUG--CGCGUCUauuaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 131168 0.66 0.896427
Target:  5'- gGCCGCGguCGCggucGCGGA--GUCGCUg- -3'
miRNA:   3'- -CGGUGCguGCG----CGUCUauUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 13835 0.66 0.882715
Target:  5'- aCCAUGUgggGCGCGCAGuccgcCGCCUg -3'
miRNA:   3'- cGGUGCG---UGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 39488 0.66 0.889687
Target:  5'- cGCgACGCGCGCGCGcugcugcuGGUGAaC-CCCa -3'
miRNA:   3'- -CGgUGCGUGCGCGU--------CUAUUaGcGGGa -5'
25960 3' -55.5 NC_005337.1 + 42553 0.66 0.89443
Target:  5'- gGCUACGUGCGCuaccccaccggccuGCAGGUGaaGUCcCCCa -3'
miRNA:   3'- -CGGUGCGUGCG--------------CGUCUAU--UAGcGGGa -5'
25960 3' -55.5 NC_005337.1 + 88047 0.66 0.889687
Target:  5'- cGCCACGCugauCGCGUAcGUGcUCGUCg- -3'
miRNA:   3'- -CGGUGCGu---GCGCGUcUAUuAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 30939 0.66 0.889687
Target:  5'- aCCA-GCAgCGgGCGGGUGAgcCGCCCg -3'
miRNA:   3'- cGGUgCGU-GCgCGUCUAUUa-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 39414 0.66 0.882715
Target:  5'- cGCUguuCGaCACGCGCGGg----CGCCCg -3'
miRNA:   3'- -CGGu--GC-GUGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 11317 0.66 0.889687
Target:  5'- --gGCGUugGCGCAGAggucCGUCCc -3'
miRNA:   3'- cggUGCGugCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 8728 0.66 0.909192
Target:  5'- cCCACGucguccUugGCGCGGAUGucggCGCCg- -3'
miRNA:   3'- cGGUGC------GugCGCGUCUAUua--GCGGga -5'
25960 3' -55.5 NC_005337.1 + 34989 0.66 0.90293
Target:  5'- cGCCGCGC-CGCGCcAGGcAGaCGgCCg -3'
miRNA:   3'- -CGGUGCGuGCGCG-UCUaUUaGCgGGa -5'
25960 3' -55.5 NC_005337.1 + 23931 0.67 0.844537
Target:  5'- cCCGCgGCAgGCGCGcGcgAcgCGCCCg -3'
miRNA:   3'- cGGUG-CGUgCGCGU-CuaUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 128217 0.67 0.844537
Target:  5'- cGCCGCucguggccGCGgGCGCGGAcauccaCGCCCg -3'
miRNA:   3'- -CGGUG--------CGUgCGCGUCUauua--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 11876 0.67 0.83628
Target:  5'- cGCCGCGCGCcgccGCGCAGcacgaccUCGCgCa -3'
miRNA:   3'- -CGGUGCGUG----CGCGUCuauu---AGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 122799 0.67 0.844537
Target:  5'- uGCUGCGCGCGgccaucgacCGCAGcGUGcgCGUCCg -3'
miRNA:   3'- -CGGUGCGUGC---------GCGUC-UAUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 63562 0.67 0.844537
Target:  5'- uGCaCACGCACuccuugGCGCGGucgccgGUGAggaacUCGCCCg -3'
miRNA:   3'- -CG-GUGCGUG------CGCGUC------UAUU-----AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 68495 0.67 0.852596
Target:  5'- cGCCGCGC-UGCugGCGGccGUGGgugCGCCCg -3'
miRNA:   3'- -CGGUGCGuGCG--CGUC--UAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 74551 0.67 0.852596
Target:  5'- cGCCGCGCG-GCGCGuGAUGcUgGCCg- -3'
miRNA:   3'- -CGGUGCGUgCGCGU-CUAUuAgCGGga -5'
25960 3' -55.5 NC_005337.1 + 16963 0.67 0.860449
Target:  5'- cCCgACGCGUGCGCGGAgg--CGUCCa -3'
miRNA:   3'- cGG-UGCGUGCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 81706 0.67 0.860449
Target:  5'- cGCCGCGC-CGUccccGCGGAgccAGUCGUUCa -3'
miRNA:   3'- -CGGUGCGuGCG----CGUCUa--UUAGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.