miRNA display CGI


Results 81 - 100 of 330 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 8154 0.67 0.868091
Target:  5'- gGCCGCGCgcacggcguGCGCGUAGuuguggCGCaCCa -3'
miRNA:   3'- -CGGUGCG---------UGCGCGUCuauua-GCG-GGa -5'
25960 3' -55.5 NC_005337.1 + 74931 0.67 0.868091
Target:  5'- gGCCGCGCAC---CAG-UGGUCGUCCUc -3'
miRNA:   3'- -CGGUGCGUGcgcGUCuAUUAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 50317 0.67 0.868091
Target:  5'- cGCCGCuGCccUGCGCGGAc---CGCCCg -3'
miRNA:   3'- -CGGUG-CGu-GCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 1218 0.67 0.868091
Target:  5'- cGCCGCGUACGCGgAcGAagcuacgAAUgCGCCUg -3'
miRNA:   3'- -CGGUGCGUGCGCgU-CUa------UUA-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 59731 0.67 0.852596
Target:  5'- aUCACGCGcCGCGCGGcgGAgcgCGUCUc -3'
miRNA:   3'- cGGUGCGU-GCGCGUCuaUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 12712 0.67 0.852596
Target:  5'- uCCGCGCGCGCGCcg-----CGCUCg -3'
miRNA:   3'- cGGUGCGUGCGCGucuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 99291 0.67 0.878422
Target:  5'- uGCCugGCGCgGCGCGGcguuccgcagCGCCg- -3'
miRNA:   3'- -CGGugCGUG-CGCGUCuauua-----GCGGga -5'
25960 3' -55.5 NC_005337.1 + 118805 0.67 0.875515
Target:  5'- uGCCGCGCGCGCcGUcGGUGGccaGCCa- -3'
miRNA:   3'- -CGGUGCGUGCG-CGuCUAUUag-CGGga -5'
25960 3' -55.5 NC_005337.1 + 133420 0.67 0.86506
Target:  5'- gGCCGCGCcCGCGCugcccgcCGCCUUc -3'
miRNA:   3'- -CGGUGCGuGCGCGucuauuaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 3876 0.67 0.863531
Target:  5'- gGCCGCGCaugagcgucuugaggACGCGCAGGUccacGA-CGgCCa -3'
miRNA:   3'- -CGGUGCG---------------UGCGCGUCUA----UUaGCgGGa -5'
25960 3' -55.5 NC_005337.1 + 83288 0.67 0.852596
Target:  5'- gGCCgACGacgaACGCGCGGcgcccCGCCCg -3'
miRNA:   3'- -CGG-UGCg---UGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 126123 0.67 0.860449
Target:  5'- cGCgCACGCcguGCGCGCGGcca--UGCCCg -3'
miRNA:   3'- -CG-GUGCG---UGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 81706 0.67 0.860449
Target:  5'- cGCCGCGC-CGUccccGCGGAgccAGUCGUUCa -3'
miRNA:   3'- -CGGUGCGuGCG----CGUCUa--UUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 16963 0.67 0.860449
Target:  5'- cCCgACGCGUGCGCGGAgg--CGUCCa -3'
miRNA:   3'- cGG-UGCGUGCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 94637 0.67 0.875515
Target:  5'- gGCCGCGC-CGCuGCGuGUAcAUgGCCCg -3'
miRNA:   3'- -CGGUGCGuGCG-CGUcUAU-UAgCGGGa -5'
25960 3' -55.5 NC_005337.1 + 39637 0.67 0.844537
Target:  5'- gGCCAUGUACaCGCAGcgGcgCGgCCg -3'
miRNA:   3'- -CGGUGCGUGcGCGUCuaUuaGCgGGa -5'
25960 3' -55.5 NC_005337.1 + 31095 0.67 0.844537
Target:  5'- uGUCGuCGUccaGCGUGCAG-UAGUUGCCCc -3'
miRNA:   3'- -CGGU-GCG---UGCGCGUCuAUUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 122799 0.67 0.844537
Target:  5'- uGCUGCGCGCGgccaucgacCGCAGcGUGcgCGUCCg -3'
miRNA:   3'- -CGGUGCGUGC---------GCGUC-UAUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 24718 0.67 0.844537
Target:  5'- cCCGCGgAguucCGCGGGUAcgCGCCCUa -3'
miRNA:   3'- cGGUGCgUgc--GCGUCUAUuaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 6382 0.67 0.841258
Target:  5'- gGCC-CGCACGCGCucgccggCGCCg- -3'
miRNA:   3'- -CGGuGCGUGCGCGucuauuaGCGGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.