miRNA display CGI


Results 1 - 20 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 126282 1.1 0.002202
Target:  5'- aGCCACGCACGCGCAGAUAAUCGCCCUg -3'
miRNA:   3'- -CGGUGCGUGCGCGUCUAUUAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 97060 0.84 0.133301
Target:  5'- cGCCACGCACGCGCGGcgcgcgGUGGUCugcguGCCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUC------UAUUAG-----CGGGa -5'
25960 3' -55.5 NC_005337.1 + 54014 0.82 0.159937
Target:  5'- cGUCGCGCACGCGCAc---GUCGCCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUcuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 41393 0.82 0.172761
Target:  5'- aCCGCGCGCGgGCAGAUGA-CGUCCg -3'
miRNA:   3'- cGGUGCGUGCgCGUCUAUUaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 6897 0.8 0.216862
Target:  5'- uGUCGCGCGCGCGCGGGUccgCGCCg- -3'
miRNA:   3'- -CGGUGCGUGCGCGUCUAuuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 68170 0.78 0.308537
Target:  5'- uCCACGCGCGCGCAGAcgccgcacagCGCCUc -3'
miRNA:   3'- cGGUGCGUGCGCGUCUauua------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 86671 0.78 0.311424
Target:  5'- cGCgGcCGCGCGCGCGGc--GUCGCCCa -3'
miRNA:   3'- -CGgU-GCGUGCGCGUCuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 109319 0.78 0.283469
Target:  5'- aCCACGCACGCGguGAggauGUCGUUCa -3'
miRNA:   3'- cGGUGCGUGCGCguCUau--UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 53595 0.77 0.341425
Target:  5'- cGCaCAUGCGCGCGCGGAaGcgCGCCg- -3'
miRNA:   3'- -CG-GUGCGUGCGCGUCUaUuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 3537 0.77 0.333733
Target:  5'- gGCCACGUA-GCGCAGGUAgaucucGUCGCCg- -3'
miRNA:   3'- -CGGUGCGUgCGCGUCUAU------UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 46661 0.76 0.365262
Target:  5'- gGCUGCGCGCgaucGCGCAGc-AGUCGCCCg -3'
miRNA:   3'- -CGGUGCGUG----CGCGUCuaUUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 68141 0.76 0.39879
Target:  5'- gGCCGCGCGCGCcccuagcgggcgGCGGAUcuucguggccgAGUaCGCCCUg -3'
miRNA:   3'- -CGGUGCGUGCG------------CGUCUA-----------UUA-GCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 39142 0.76 0.373459
Target:  5'- aGCCugGUgaugcagaacucGCGCGCGGAcaUGAUCGCCg- -3'
miRNA:   3'- -CGGugCG------------UGCGCGUCU--AUUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 84918 0.76 0.373459
Target:  5'- aGCCGcCGCACGCGCcgcAGAagcaucgAGUUGCCCUc -3'
miRNA:   3'- -CGGU-GCGUGCGCG---UCUa------UUAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 99475 0.75 0.422506
Target:  5'- gGCCAccCGCgACGCGCAGAUGgcgaccaugauccuGUCGCCg- -3'
miRNA:   3'- -CGGU--GCG-UGCGCGUCUAU--------------UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 37405 0.75 0.416276
Target:  5'- cGCCGCGCAucCGCGCGGA--GUCGCg-- -3'
miRNA:   3'- -CGGUGCGU--GCGCGUCUauUAGCGgga -5'
25960 3' -55.5 NC_005337.1 + 31006 0.75 0.434223
Target:  5'- gGCCACGUACGUGUAGAggUAGUgGgCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUCU--AUUAgCgGGa -5'
25960 3' -55.5 NC_005337.1 + 97998 0.75 0.407474
Target:  5'- gGCCGCGUuCGCGCAGcggcUGGUCGCgCUg -3'
miRNA:   3'- -CGGUGCGuGCGCGUCu---AUUAGCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 81556 0.75 0.416276
Target:  5'- cGgCGCGCAgcuCGCGCAGGUAGgccUCGUCCg -3'
miRNA:   3'- -CgGUGCGU---GCGCGUCUAUU---AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 116608 0.75 0.407474
Target:  5'- cGCCGCGgugcgGCGCGUGGAcguGUCGCCCg -3'
miRNA:   3'- -CGGUGCg----UGCGCGUCUau-UAGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.