miRNA display CGI


Results 41 - 60 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 82120 0.73 0.520051
Target:  5'- aGCCGCGCugGCGCAuGAg---CGCgCg -3'
miRNA:   3'- -CGGUGCGugCGCGU-CUauuaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 68967 0.73 0.520051
Target:  5'- gGCaUGCGCGCGCGCAGc---UUGCCCUc -3'
miRNA:   3'- -CG-GUGCGUGCGCGUCuauuAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 77909 0.73 0.530021
Target:  5'- cCCGCGCGCGCcaucuucaGCAGGUuGUUGUCCg -3'
miRNA:   3'- cGGUGCGUGCG--------CGUCUAuUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 91884 0.72 0.58079
Target:  5'- gGCCGCGCGC-CGCGGcgccuccgGGUCGCCg- -3'
miRNA:   3'- -CGGUGCGUGcGCGUCua------UUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 126213 0.72 0.58079
Target:  5'- cGCCACGCGCGaguGCGuGAUGGagcUgGCCCUc -3'
miRNA:   3'- -CGGUGCGUGCg--CGU-CUAUU---AgCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 100227 0.72 0.611756
Target:  5'- cGCCGCGUGCGCGU-GAUcgcGGUCccGCCCg -3'
miRNA:   3'- -CGGUGCGUGCGCGuCUA---UUAG--CGGGa -5'
25960 3' -55.5 NC_005337.1 + 109875 0.72 0.611756
Target:  5'- cGCCAUGCACcggaGCauGguGAUcuGGUCGCCCg -3'
miRNA:   3'- -CGGUGCGUG----CG--CguCUA--UUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 84751 0.72 0.601408
Target:  5'- cCCGCGCGCGCGC-GAUGGUgUGCUUg -3'
miRNA:   3'- cGGUGCGUGCGCGuCUAUUA-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 86383 0.72 0.58079
Target:  5'- gGCCGCGUuuauccacuGCGCGCAGAagucugCGUCCg -3'
miRNA:   3'- -CGGUGCG---------UGCGCGUCUauua--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 58316 0.72 0.611756
Target:  5'- cGCCGCGCGaguCGCGCAGcucGUAGUaCGUCUUc -3'
miRNA:   3'- -CGGUGCGU---GCGCGUC---UAUUA-GCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 54212 0.72 0.58079
Target:  5'- aGCCuCGUggGCGCGGAUGAcagCGUCCg -3'
miRNA:   3'- -CGGuGCGugCGCGUCUAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 53657 0.72 0.58079
Target:  5'- cGCCACGCGCGCuucGCGGcGUGcUCGCUg- -3'
miRNA:   3'- -CGGUGCGUGCG---CGUC-UAUuAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 65707 0.72 0.58079
Target:  5'- uGCaCAgcCGCACGCGguGggGcgCGCCCg -3'
miRNA:   3'- -CG-GU--GCGUGCGCguCuaUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 34800 0.72 0.611756
Target:  5'- cGCCAucUGCGCGuCGCGGGUGGccagCGCCUc -3'
miRNA:   3'- -CGGU--GCGUGC-GCGUCUAUUa---GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 37702 0.71 0.653224
Target:  5'- cGCC-CGCGCGCGU-GA-GGUCGUCCa -3'
miRNA:   3'- -CGGuGCGUGCGCGuCUaUUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 52022 0.71 0.642861
Target:  5'- gGCCGCGCGCGCGCGGucaugGAguucCGggaCCUg -3'
miRNA:   3'- -CGGUGCGUGCGCGUCua---UUa---GCg--GGA- -5'
25960 3' -55.5 NC_005337.1 + 123298 0.71 0.642861
Target:  5'- uGCCgcACGCGCuGCGCGGAUcg-CGCCg- -3'
miRNA:   3'- -CGG--UGCGUG-CGCGUCUAuuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 33693 0.71 0.653224
Target:  5'- aGCCGCGaGCGCG-AGAUGAg-GCCCa -3'
miRNA:   3'- -CGGUGCgUGCGCgUCUAUUagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 76998 0.71 0.653224
Target:  5'- aGCCGCGCGCgccggccccGCGCGGccccgUGCCCg -3'
miRNA:   3'- -CGGUGCGUG---------CGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 68399 0.71 0.642861
Target:  5'- cGCCcuGCGCGCGUGCGuGGUAGcgCGCgCCg -3'
miRNA:   3'- -CGG--UGCGUGCGCGU-CUAUUa-GCG-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.