miRNA display CGI


Results 61 - 80 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 77223 0.71 0.663569
Target:  5'- gGCCugGCuGCgGCGUAG-UAcgCGCCCa -3'
miRNA:   3'- -CGGugCG-UG-CGCGUCuAUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 28493 0.71 0.663569
Target:  5'- gGCCGCGCgGCGCGCGG----UCGCgCg -3'
miRNA:   3'- -CGGUGCG-UGCGCGUCuauuAGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 3572 0.71 0.663569
Target:  5'- uCCACGCACGCGgaCGGGgacuUGAgcagCGCCCc -3'
miRNA:   3'- cGGUGCGUGCGC--GUCU----AUUa---GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 45491 0.71 0.642861
Target:  5'- aGCCGCuucugGUACGCGCGGAccugCGCCUc -3'
miRNA:   3'- -CGGUG-----CGUGCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 52022 0.71 0.642861
Target:  5'- gGCCGCGCGCGCGCGGucaugGAguucCGggaCCUg -3'
miRNA:   3'- -CGGUGCGUGCGCGUCua---UUa---GCg--GGA- -5'
25960 3' -55.5 NC_005337.1 + 68399 0.71 0.642861
Target:  5'- cGCCcuGCGCGCGUGCGuGGUAGcgCGCgCCg -3'
miRNA:   3'- -CGG--UGCGUGCGCGU-CUAUUa-GCG-GGa -5'
25960 3' -55.5 NC_005337.1 + 124435 0.71 0.642861
Target:  5'- cGCCGCGCGCggGUGCGGGgcc-UGCCCc -3'
miRNA:   3'- -CGGUGCGUG--CGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 12286 0.71 0.653224
Target:  5'- cCCGCGCGCaggagcucGCGCAcGAUGuccgcguUCGCCCg -3'
miRNA:   3'- cGGUGCGUG--------CGCGU-CUAUu------AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 118934 0.71 0.663569
Target:  5'- cGUCGCGCGgGCGCAGcGUGcGUCGCgCg -3'
miRNA:   3'- -CGGUGCGUgCGCGUC-UAU-UAGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 33154 0.71 0.663569
Target:  5'- uCCGCGCAgcCGCGCucugAGUCGUCCUu -3'
miRNA:   3'- cGGUGCGU--GCGCGucuaUUAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 34816 0.71 0.663569
Target:  5'- cGCCcucGCGCACGCGCGcGUccacgaGGUgGCCCa -3'
miRNA:   3'- -CGG---UGCGUGCGCGUcUA------UUAgCGGGa -5'
25960 3' -55.5 NC_005337.1 + 1331 0.71 0.663569
Target:  5'- uCCA-GCGCGCuGCAGAgcgGGUCGCCg- -3'
miRNA:   3'- cGGUgCGUGCG-CGUCUa--UUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 76998 0.71 0.653224
Target:  5'- aGCCGCGCGCgccggccccGCGCGGccccgUGCCCg -3'
miRNA:   3'- -CGGUGCGUG---------CGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 33693 0.71 0.653224
Target:  5'- aGCCGCGaGCGCG-AGAUGAg-GCCCa -3'
miRNA:   3'- -CGGUGCgUGCGCgUCUAUUagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 95916 0.7 0.68109
Target:  5'- uCCACGCccgucgugugcgugAUGCGCAGcgcGUAcUCGCCCg -3'
miRNA:   3'- cGGUGCG--------------UGCGCGUC---UAUuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 80622 0.7 0.714721
Target:  5'- cGCCGCgaaGCGCGCGUGGcggaagacGUAGUCguGCCCg -3'
miRNA:   3'- -CGGUG---CGUGCGCGUC--------UAUUAG--CGGGa -5'
25960 3' -55.5 NC_005337.1 + 38482 0.7 0.724772
Target:  5'- cGCCGgGCGCGCGC-----GUCGCCg- -3'
miRNA:   3'- -CGGUgCGUGCGCGucuauUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 112862 0.7 0.724772
Target:  5'- gGCCAaGCGCGCGCuucAUGacGUCGCUCa -3'
miRNA:   3'- -CGGUgCGUGCGCGuc-UAU--UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 48041 0.7 0.673887
Target:  5'- gGCgGCGaacgACGCGCGGAUAGaCGCCg- -3'
miRNA:   3'- -CGgUGCg---UGCGCGUCUAUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 35550 0.7 0.714721
Target:  5'- gGUCA-GCACGCGCAGGg---CGCCg- -3'
miRNA:   3'- -CGGUgCGUGCGCGUCUauuaGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.