miRNA display CGI


Results 21 - 40 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 65879 0.75 0.434223
Target:  5'- aCCACGCacGCGCGCAGGgcggacGUCGCaCCg -3'
miRNA:   3'- cGGUGCG--UGCGCGUCUau----UAGCG-GGa -5'
25960 3' -55.5 NC_005337.1 + 132770 0.75 0.443363
Target:  5'- cGCgCugGCGCGCGCcgAGGUGAcggUGCCCa -3'
miRNA:   3'- -CG-GugCGUGCGCG--UCUAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 121571 0.74 0.452611
Target:  5'- cGCgGCGCGCGCGCGGA----CGCCa- -3'
miRNA:   3'- -CGgUGCGUGCGCGUCUauuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 132715 0.74 0.452611
Target:  5'- gGCCGCGCcauGCGCGCGGuaucaagcGGUCGCCg- -3'
miRNA:   3'- -CGGUGCG---UGCGCGUCua------UUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 76869 0.74 0.45634
Target:  5'- gGCCGCGUGCGCGCucgucaugcuauuugGGGUG-UCGCCUc -3'
miRNA:   3'- -CGGUGCGUGCGCG---------------UCUAUuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 86517 0.74 0.461963
Target:  5'- -aCGCGUugGCGCGGcgGG-CGCCCUu -3'
miRNA:   3'- cgGUGCGugCGCGUCuaUUaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 30276 0.74 0.471415
Target:  5'- uCCACG-GCGCGCAGGUGAgCGCCa- -3'
miRNA:   3'- cGGUGCgUGCGCGUCUAUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 90079 0.74 0.480965
Target:  5'- gGCCagacgcauuGCGCGCGUGCAGAgacucAUCGCCa- -3'
miRNA:   3'- -CGG---------UGCGUGCGCGUCUau---UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 82260 0.74 0.480965
Target:  5'- aCCGCGCGCGCGCGGc----CGUCCg -3'
miRNA:   3'- cGGUGCGUGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 129690 0.74 0.480965
Target:  5'- aCCA-GCACGCGCAGucgccgCGCCCg -3'
miRNA:   3'- cGGUgCGUGCGCGUCuauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 5570 0.74 0.487706
Target:  5'- cGCaGCGCGCuCGCAGAUcagcugcgcuauucGGUCGCCCg -3'
miRNA:   3'- -CGgUGCGUGcGCGUCUA--------------UUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 133458 0.74 0.487706
Target:  5'- gGCC-CGCGCGCGCGGAcggcuccgcggagcUGGUCuGCCUc -3'
miRNA:   3'- -CGGuGCGUGCGCGUCU--------------AUUAG-CGGGa -5'
25960 3' -55.5 NC_005337.1 + 133458 0.74 0.487706
Target:  5'- gGCC-CGCGCGCGCGGAcggcuccgcggagcUGGUCuGCCUc -3'
miRNA:   3'- -CGGuGCGUGCGCGUCU--------------AUUAG-CGGGa -5'
25960 3' -55.5 NC_005337.1 + 98878 0.74 0.490608
Target:  5'- aCCGCGCcgcGCGCGCGGAcUGcgCGCUCg -3'
miRNA:   3'- cGGUGCG---UGCGCGUCU-AUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 120518 0.74 0.490608
Target:  5'- cGCCGCGUucggGCGCGCGGAgaucaCGCUCa -3'
miRNA:   3'- -CGGUGCG----UGCGCGUCUauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 72604 0.74 0.490608
Target:  5'- gGUCGCGCGCGgGCGuGGUGGU-GCCCg -3'
miRNA:   3'- -CGGUGCGUGCgCGU-CUAUUAgCGGGa -5'
25960 3' -55.5 NC_005337.1 + 133654 0.74 0.499363
Target:  5'- cGCCGCGCugGacgccgaCGCGGAgu-UCGCCUg -3'
miRNA:   3'- -CGGUGCGugC-------GCGUCUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 133654 0.74 0.499363
Target:  5'- cGCCGCGCugGacgccgaCGCGGAgu-UCGCCUg -3'
miRNA:   3'- -CGGUGCGugC-------GCGUCUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 82120 0.73 0.520051
Target:  5'- aGCCGCGCugGCGCAuGAg---CGCgCg -3'
miRNA:   3'- -CGGUGCGugCGCGU-CUauuaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 68967 0.73 0.520051
Target:  5'- gGCaUGCGCGCGCGCAGc---UUGCCCUc -3'
miRNA:   3'- -CG-GUGCGUGCGCGUCuauuAGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.