Results 41 - 60 of 330 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25960 | 3' | -55.5 | NC_005337.1 | + | 77909 | 0.73 | 0.530021 |
Target: 5'- cCCGCGCGCGCcaucuucaGCAGGUuGUUGUCCg -3' miRNA: 3'- cGGUGCGUGCG--------CGUCUAuUAGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 109899 | 0.73 | 0.540061 |
Target: 5'- cGCCACGUGCGCGUGGAagacguGUCGCgUg -3' miRNA: 3'- -CGGUGCGUGCGCGUCUau----UAGCGgGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 2593 | 0.73 | 0.540061 |
Target: 5'- aGCCACGCGCGCGaAGucgaAGUCGUUCa -3' miRNA: 3'- -CGGUGCGUGCGCgUCua--UUAGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 91884 | 0.72 | 0.58079 |
Target: 5'- gGCCGCGCGC-CGCGGcgccuccgGGUCGCCg- -3' miRNA: 3'- -CGGUGCGUGcGCGUCua------UUAGCGGga -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 53657 | 0.72 | 0.58079 |
Target: 5'- cGCCACGCGCGCuucGCGGcGUGcUCGCUg- -3' miRNA: 3'- -CGGUGCGUGCG---CGUC-UAUuAGCGGga -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 65707 | 0.72 | 0.58079 |
Target: 5'- uGCaCAgcCGCACGCGguGggGcgCGCCCg -3' miRNA: 3'- -CG-GU--GCGUGCGCguCuaUuaGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 54212 | 0.72 | 0.58079 |
Target: 5'- aGCCuCGUggGCGCGGAUGAcagCGUCCg -3' miRNA: 3'- -CGGuGCGugCGCGUCUAUUa--GCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 86383 | 0.72 | 0.58079 |
Target: 5'- gGCCGCGUuuauccacuGCGCGCAGAagucugCGUCCg -3' miRNA: 3'- -CGGUGCG---------UGCGCGUCUauua--GCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 126213 | 0.72 | 0.58079 |
Target: 5'- cGCCACGCGCGaguGCGuGAUGGagcUgGCCCUc -3' miRNA: 3'- -CGGUGCGUGCg--CGU-CUAUU---AgCGGGA- -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 84751 | 0.72 | 0.601408 |
Target: 5'- cCCGCGCGCGCGC-GAUGGUgUGCUUg -3' miRNA: 3'- cGGUGCGUGCGCGuCUAUUA-GCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 100227 | 0.72 | 0.611756 |
Target: 5'- cGCCGCGUGCGCGU-GAUcgcGGUCccGCCCg -3' miRNA: 3'- -CGGUGCGUGCGCGuCUA---UUAG--CGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 58316 | 0.72 | 0.611756 |
Target: 5'- cGCCGCGCGaguCGCGCAGcucGUAGUaCGUCUUc -3' miRNA: 3'- -CGGUGCGU---GCGCGUC---UAUUA-GCGGGA- -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 109875 | 0.72 | 0.611756 |
Target: 5'- cGCCAUGCACcggaGCauGguGAUcuGGUCGCCCg -3' miRNA: 3'- -CGGUGCGUG----CG--CguCUA--UUAGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 34800 | 0.72 | 0.611756 |
Target: 5'- cGCCAucUGCGCGuCGCGGGUGGccagCGCCUc -3' miRNA: 3'- -CGGU--GCGUGC-GCGUCUAUUa---GCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 87463 | 0.71 | 0.622119 |
Target: 5'- cGCCgucguagacgACGCuCGCGCucagcgGGAUGAUCGUCCa -3' miRNA: 3'- -CGG----------UGCGuGCGCG------UCUAUUAGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 29723 | 0.71 | 0.622119 |
Target: 5'- cGCgCACGCGCGCGCGGu--GUUGCg-- -3' miRNA: 3'- -CG-GUGCGUGCGCGUCuauUAGCGgga -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 80044 | 0.71 | 0.640787 |
Target: 5'- -aCACGCugGCGCGGcgGAcgcugucauccgCGCCCa -3' miRNA: 3'- cgGUGCGugCGCGUCuaUUa-----------GCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 45491 | 0.71 | 0.642861 |
Target: 5'- aGCCGCuucugGUACGCGCGGAccugCGCCUc -3' miRNA: 3'- -CGGUG-----CGUGCGCGUCUauuaGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 52022 | 0.71 | 0.642861 |
Target: 5'- gGCCGCGCGCGCGCGGucaugGAguucCGggaCCUg -3' miRNA: 3'- -CGGUGCGUGCGCGUCua---UUa---GCg--GGA- -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 123298 | 0.71 | 0.642861 |
Target: 5'- uGCCgcACGCGCuGCGCGGAUcg-CGCCg- -3' miRNA: 3'- -CGG--UGCGUG-CGCGUCUAuuaGCGGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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