miRNA display CGI


Results 81 - 100 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 29215 0.7 0.673887
Target:  5'- cGCUGCGCAgcgcCGCGCGGccgggcGUCGCCUg -3'
miRNA:   3'- -CGGUGCGU----GCGCGUCuau---UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 10907 0.7 0.673887
Target:  5'- cGCCGCGUcgcgcacgcucuGCGCGUcgaAGAUGAUCGuuuuCCCg -3'
miRNA:   3'- -CGGUGCG------------UGCGCG---UCUAUUAGC----GGGa -5'
25960 3' -55.5 NC_005337.1 + 48041 0.7 0.673887
Target:  5'- gGCgGCGaacgACGCGCGGAUAGaCGCCg- -3'
miRNA:   3'- -CGgUGCg---UGCGCGUCUAUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 109177 0.7 0.673887
Target:  5'- cGCCGCGC-CGCGCGGGcgga-GCUCg -3'
miRNA:   3'- -CGGUGCGuGCGCGUCUauuagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 95916 0.7 0.68109
Target:  5'- uCCACGCccgucgugugcgugAUGCGCAGcgcGUAcUCGCCCg -3'
miRNA:   3'- cGGUGCG--------------UGCGCGUC---UAUuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 58996 0.7 0.68109
Target:  5'- cGCUACGCGCGCaucaagagcgccguGCGGucguggCGCCCg -3'
miRNA:   3'- -CGGUGCGUGCG--------------CGUCuauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 8258 0.7 0.682118
Target:  5'- -aCACGCACGCGCGGGgguugaacgCGgCCg -3'
miRNA:   3'- cgGUGCGUGCGCGUCUauua-----GCgGGa -5'
25960 3' -55.5 NC_005337.1 + 32331 0.7 0.684171
Target:  5'- gGCCACGUGCggGCGCAGc---UCGUCCa -3'
miRNA:   3'- -CGGUGCGUG--CGCGUCuauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 29509 0.7 0.684171
Target:  5'- gGCCGCGC-CGUGCgAGAUcaugcAGUCGCgCUc -3'
miRNA:   3'- -CGGUGCGuGCGCG-UCUA-----UUAGCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 69284 0.7 0.684171
Target:  5'- cGCCGCGCGCgacgggcaguucGCGCGGGaGAagGCCUUc -3'
miRNA:   3'- -CGGUGCGUG------------CGCGUCUaUUagCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 109496 0.7 0.694411
Target:  5'- aGCCACGCguACGUGguGAUcaggaaggugAGcCGCCCg -3'
miRNA:   3'- -CGGUGCG--UGCGCguCUA----------UUaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 133570 0.7 0.694411
Target:  5'- gGCCGCGgGCGUGCGcgcGAgcuUCGCCUc -3'
miRNA:   3'- -CGGUGCgUGCGCGU---CUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 133570 0.7 0.694411
Target:  5'- gGCCGCGgGCGUGCGcgcGAgcuUCGCCUc -3'
miRNA:   3'- -CGGUGCgUGCGCGU---CUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 89964 0.7 0.694411
Target:  5'- gGCCGCaGCACGCGCucGGggGAgcggCGCCg- -3'
miRNA:   3'- -CGGUG-CGUGCGCG--UCuaUUa---GCGGga -5'
25960 3' -55.5 NC_005337.1 + 130174 0.7 0.704597
Target:  5'- uCCGCGCGCGCGguGAgGA-CGCUg- -3'
miRNA:   3'- cGGUGCGUGCGCguCUaUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 9843 0.7 0.704597
Target:  5'- gGCCcCGCacccGCGCGCGGc--GUUGCCCa -3'
miRNA:   3'- -CGGuGCG----UGCGCGUCuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 38358 0.7 0.704597
Target:  5'- cGCgAgGCGCGCGCGGccgccGUCGCCg- -3'
miRNA:   3'- -CGgUgCGUGCGCGUCuau--UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 117591 0.7 0.704597
Target:  5'- gGCCGcCGUGCGCG-AGAUGcuGUCGaCCCUc -3'
miRNA:   3'- -CGGU-GCGUGCGCgUCUAU--UAGC-GGGA- -5'
25960 3' -55.5 NC_005337.1 + 80143 0.7 0.711691
Target:  5'- aGCCAUGCGCgcgGCGCGGccgucgcgcuccacGUAGcagCGCCCg -3'
miRNA:   3'- -CGGUGCGUG---CGCGUC--------------UAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 35550 0.7 0.714721
Target:  5'- gGUCA-GCACGCGCAGGg---CGCCg- -3'
miRNA:   3'- -CGGUgCGUGCGCGUCUauuaGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.