miRNA display CGI


Results 41 - 60 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 15860 0.66 0.896427
Target:  5'- cGCCcaugcucugcauGCGCgACGUGguGAUGAucaUCGCCa- -3'
miRNA:   3'- -CGG------------UGCG-UGCGCguCUAUU---AGCGGga -5'
25960 3' -55.5 NC_005337.1 + 110216 0.66 0.896427
Target:  5'- gGCCGCG-GC-CGCGGccgcGUCGCCCg -3'
miRNA:   3'- -CGGUGCgUGcGCGUCuau-UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 11466 0.66 0.896427
Target:  5'- -aCGCGCACGCuGCGGucGAUgGCCg- -3'
miRNA:   3'- cgGUGCGUGCG-CGUCuaUUAgCGGga -5'
25960 3' -55.5 NC_005337.1 + 115558 0.66 0.896427
Target:  5'- cGCCA-GCGCGcCGCAGcuccUCGCCg- -3'
miRNA:   3'- -CGGUgCGUGC-GCGUCuauuAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 131168 0.66 0.896427
Target:  5'- gGCCGCGguCGCggucGCGGA--GUCGCUg- -3'
miRNA:   3'- -CGGUGCguGCG----CGUCUauUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 112751 0.66 0.896427
Target:  5'- uGCCGC-CGCGCGCGG----UCGCUg- -3'
miRNA:   3'- -CGGUGcGUGCGCGUCuauuAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 42553 0.66 0.89443
Target:  5'- gGCUACGUGCGCuaccccaccggccuGCAGGUGaaGUCcCCCa -3'
miRNA:   3'- -CGGUGCGUGCG--------------CGUCUAU--UAGcGGGa -5'
25960 3' -55.5 NC_005337.1 + 1127 0.66 0.892411
Target:  5'- aGCCGCaGCACGCGCgcgaccagcuccgcgGGGaGcgCGCCg- -3'
miRNA:   3'- -CGGUG-CGUGCGCG---------------UCUaUuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 128271 0.66 0.891734
Target:  5'- cGCCGCuGCACGCGgCGGucugcaacgcgcgCGCCUg -3'
miRNA:   3'- -CGGUG-CGUGCGC-GUCuauua--------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 21358 0.66 0.889687
Target:  5'- --aGCGCGaacuugugUGCGCAGAUcagCGCCCa -3'
miRNA:   3'- cggUGCGU--------GCGCGUCUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 20776 0.66 0.889687
Target:  5'- gGCCACGCGCuuCGCGGGgacggGcgUGCCg- -3'
miRNA:   3'- -CGGUGCGUGc-GCGUCUa----UuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 4111 0.66 0.889687
Target:  5'- aCCGCGCGCGCGgAGA----CGCgCg -3'
miRNA:   3'- cGGUGCGUGCGCgUCUauuaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 88047 0.66 0.889687
Target:  5'- cGCCACGCugauCGCGUAcGUGcUCGUCg- -3'
miRNA:   3'- -CGGUGCGu---GCGCGUcUAUuAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 88331 0.66 0.889687
Target:  5'- cGCCACGCgcgccggcGCGCGCgAGAaGAcCGUCUUc -3'
miRNA:   3'- -CGGUGCG--------UGCGCG-UCUaUUaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 39488 0.66 0.889687
Target:  5'- cGCgACGCGCGCGCGcugcugcuGGUGAaC-CCCa -3'
miRNA:   3'- -CGgUGCGUGCGCGU--------CUAUUaGcGGGa -5'
25960 3' -55.5 NC_005337.1 + 90310 0.66 0.889687
Target:  5'- cGCCGgGCGCGCcgccGUAGAUGGUgCGCg-- -3'
miRNA:   3'- -CGGUgCGUGCG----CGUCUAUUA-GCGgga -5'
25960 3' -55.5 NC_005337.1 + 11317 0.66 0.889687
Target:  5'- --gGCGUugGCGCAGAggucCGUCCc -3'
miRNA:   3'- cggUGCGugCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 120430 0.66 0.889687
Target:  5'- aGCCG-GCAgGCgGCGGAcUGcgCGCCCc -3'
miRNA:   3'- -CGGUgCGUgCG-CGUCU-AUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 30939 0.66 0.889687
Target:  5'- aCCA-GCAgCGgGCGGGUGAgcCGCCCg -3'
miRNA:   3'- cGGUgCGU-GCgCGUCUAUUa-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 97696 0.66 0.889
Target:  5'- cGCCGCGCugGCggaccggcuagguGCGGAccUGGUCuUCCUc -3'
miRNA:   3'- -CGGUGCGugCG-------------CGUCU--AUUAGcGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.