miRNA display CGI


Results 61 - 80 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 114554 0.66 0.889
Target:  5'- gGCCAUcguggagGCGCGgcCGCAGAUGG-CGCCg- -3'
miRNA:   3'- -CGGUG-------CGUGC--GCGUCUAUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 52231 0.66 0.88762
Target:  5'- gGCCGCGCucgacgccauuuccGCGaCGCu----GUCGCCCa -3'
miRNA:   3'- -CGGUGCG--------------UGC-GCGucuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 97800 0.66 0.88762
Target:  5'- gGCCAggcCGUGCG-GCAGGUGGUgaagaccgugcgucCGCCCg -3'
miRNA:   3'- -CGGU---GCGUGCgCGUCUAUUA--------------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 92972 0.66 0.882715
Target:  5'- cGCCACGCuggacaACGCGCuGGccgUGAUgGCgCUg -3'
miRNA:   3'- -CGGUGCG------UGCGCGuCU---AUUAgCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 13835 0.66 0.882715
Target:  5'- aCCAUGUgggGCGCGCAGuccgcCGCCUg -3'
miRNA:   3'- cGGUGCG---UGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 60023 0.66 0.882715
Target:  5'- cGgCGCGCGgagaccCGCGCGGcgAccCGCCCUc -3'
miRNA:   3'- -CgGUGCGU------GCGCGUCuaUuaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 91324 0.66 0.882715
Target:  5'- gGCCACGguccccuugacCAUGCGCAGGUucUgGCCg- -3'
miRNA:   3'- -CGGUGC-----------GUGCGCGUCUAuuAgCGGga -5'
25960 3' -55.5 NC_005337.1 + 39414 0.66 0.882715
Target:  5'- cGCUguuCGaCACGCGCGGg----CGCCCg -3'
miRNA:   3'- -CGGu--GC-GUGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 102384 0.66 0.882715
Target:  5'- aCCGCGCugGUGgAGAgcgcgAAgaccgUGCCCa -3'
miRNA:   3'- cGGUGCGugCGCgUCUa----UUa----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 32771 0.66 0.882005
Target:  5'- aGCCGCGCGgagcgcuCGCGCAuGAgcgcGAgcagCGCCUg -3'
miRNA:   3'- -CGGUGCGU-------GCGCGU-CUa---UUa---GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 10385 0.66 0.880579
Target:  5'- gGCCACGCAgcuggugcucgggcUGUGgAGGUGcggcugCGCCCa -3'
miRNA:   3'- -CGGUGCGU--------------GCGCgUCUAUua----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 99291 0.67 0.878422
Target:  5'- uGCCugGCGCgGCGCGGcguuccgcagCGCCg- -3'
miRNA:   3'- -CGGugCGUG-CGCGUCuauua-----GCGGga -5'
25960 3' -55.5 NC_005337.1 + 12576 0.67 0.876245
Target:  5'- cGCCucccCGCGCGCGUucacguuggCGCCCg -3'
miRNA:   3'- -CGGu---GCGUGCGCGucuauua--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 66113 0.67 0.875515
Target:  5'- uCUGCGCGCGCGUGGAguucaaGUCCa -3'
miRNA:   3'- cGGUGCGUGCGCGUCUauuag-CGGGa -5'
25960 3' -55.5 NC_005337.1 + 122863 0.67 0.875515
Target:  5'- aGCC-CGCGCGCcuGCGGAacccGggGCCCUg -3'
miRNA:   3'- -CGGuGCGUGCG--CGUCUau--UagCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 42202 0.67 0.875515
Target:  5'- cCCACGCuguGCGCGGAcuucaaGCCCa -3'
miRNA:   3'- cGGUGCGug-CGCGUCUauuag-CGGGa -5'
25960 3' -55.5 NC_005337.1 + 87822 0.67 0.875515
Target:  5'- cGCgGCGCgccGCGCGCAGA---UCGCg-- -3'
miRNA:   3'- -CGgUGCG---UGCGCGUCUauuAGCGgga -5'
25960 3' -55.5 NC_005337.1 + 30232 0.67 0.875515
Target:  5'- aGCgUGCGCGaggagacguucCGCGC-GAUGgcGUCGCCCUg -3'
miRNA:   3'- -CG-GUGCGU-----------GCGCGuCUAU--UAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 94637 0.67 0.875515
Target:  5'- gGCCGCGC-CGCuGCGuGUAcAUgGCCCg -3'
miRNA:   3'- -CGGUGCGuGCG-CGUcUAU-UAgCGGGa -5'
25960 3' -55.5 NC_005337.1 + 132639 0.67 0.875515
Target:  5'- cGCCGCGgGCGCGCGc---AUCGaCCUc -3'
miRNA:   3'- -CGGUGCgUGCGCGUcuauUAGCgGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.