miRNA display CGI


Results 1 - 20 of 330 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 565 0.68 0.819203
Target:  5'- gGCCGCGCGuacgccgcggcCGCGCGGAagc-CGCCg- -3'
miRNA:   3'- -CGGUGCGU-----------GCGCGUCUauuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 565 0.68 0.819203
Target:  5'- gGCCGCGCGuacgccgcggcCGCGCGGAagc-CGCCg- -3'
miRNA:   3'- -CGGUGCGU-----------GCGCGUCUauuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 821 0.68 0.827833
Target:  5'- aGCCGucCGCGCGCGCGG------GCCCg -3'
miRNA:   3'- -CGGU--GCGUGCGCGUCuauuagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 821 0.68 0.827833
Target:  5'- aGCCGucCGCGCGCGCGG------GCCCg -3'
miRNA:   3'- -CGGU--GCGUGCGCGUCuauuagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 985 0.69 0.744619
Target:  5'- gGCUgGCGCgGCGCGCGGAgggcgggcGUCGCCUg -3'
miRNA:   3'- -CGG-UGCG-UGCGCGUCUau------UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 985 0.69 0.744619
Target:  5'- gGCUgGCGCgGCGCGCGGAgggcgggcGUCGCCUg -3'
miRNA:   3'- -CGG-UGCG-UGCGCGUCUau------UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 1127 0.66 0.892411
Target:  5'- aGCCGCaGCACGCGCgcgaccagcuccgcgGGGaGcgCGCCg- -3'
miRNA:   3'- -CGGUG-CGUGCGCG---------------UCUaUuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 1218 0.67 0.868091
Target:  5'- cGCCGCGUACGCGgAcGAagcuacgAAUgCGCCUg -3'
miRNA:   3'- -CGGUGCGUGCGCgU-CUa------UUA-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 1331 0.71 0.663569
Target:  5'- uCCA-GCGCGCuGCAGAgcgGGUCGCCg- -3'
miRNA:   3'- cGGUgCGUGCG-CGUCUa--UUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 2223 0.69 0.734741
Target:  5'- gGCCGCgaGCGCGCGCAGG-AAcCGCgCg -3'
miRNA:   3'- -CGGUG--CGUGCGCGUCUaUUaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 2593 0.73 0.540061
Target:  5'- aGCCACGCGCGCGaAGucgaAGUCGUUCa -3'
miRNA:   3'- -CGGUGCGUGCGCgUCua--UUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 3184 0.69 0.741665
Target:  5'- cCCAUGgccaGCGCGCAGAccacgaacucgcgcUcGUCGCCCUu -3'
miRNA:   3'- cGGUGCg---UGCGCGUCU--------------AuUAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 3537 0.77 0.333733
Target:  5'- gGCCACGUA-GCGCAGGUAgaucucGUCGCCg- -3'
miRNA:   3'- -CGGUGCGUgCGCGUCUAU------UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 3572 0.71 0.663569
Target:  5'- uCCACGCACGCGgaCGGGgacuUGAgcagCGCCCc -3'
miRNA:   3'- cGGUGCGUGCGC--GUCU----AUUa---GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 3876 0.67 0.863531
Target:  5'- gGCCGCGCaugagcgucuugaggACGCGCAGGUccacGA-CGgCCa -3'
miRNA:   3'- -CGGUGCG---------------UGCGCGUCUA----UUaGCgGGa -5'
25960 3' -55.5 NC_005337.1 + 4111 0.66 0.889687
Target:  5'- aCCGCGCGCGCGgAGA----CGCgCg -3'
miRNA:   3'- cGGUGCGUGCGCgUCUauuaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 4494 0.66 0.896427
Target:  5'- cGCCA-GCACGUGCAGcgGcgUGuuCCCg -3'
miRNA:   3'- -CGGUgCGUGCGCGUCuaUuaGC--GGGa -5'
25960 3' -55.5 NC_005337.1 + 4757 0.67 0.83628
Target:  5'- cGCCGCGCGCgagcaGCGCGucGAUGA-CGCgCg -3'
miRNA:   3'- -CGGUGCGUG-----CGCGU--CUAUUaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 5570 0.74 0.487706
Target:  5'- cGCaGCGCGCuCGCAGAUcagcugcgcuauucGGUCGCCCg -3'
miRNA:   3'- -CGgUGCGUGcGCGUCUA--------------UUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 5570 0.66 0.909192
Target:  5'- -aCACGCGCGC-CAGccgcGUCGCCa- -3'
miRNA:   3'- cgGUGCGUGCGcGUCuau-UAGCGGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.