miRNA display CGI


Results 41 - 60 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 11876 0.67 0.83628
Target:  5'- cGCCGCGCGCcgccGCGCAGcacgaccUCGCgCa -3'
miRNA:   3'- -CGGUGCGUG----CGCGUCuauu---AGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 12286 0.71 0.653224
Target:  5'- cCCGCGCGCaggagcucGCGCAcGAUGuccgcguUCGCCCg -3'
miRNA:   3'- cGGUGCGUG--------CGCGU-CUAUu------AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 12576 0.67 0.876245
Target:  5'- cGCCucccCGCGCGCGUucacguuggCGCCCg -3'
miRNA:   3'- -CGGu---GCGUGCGCGucuauua--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 12712 0.67 0.852596
Target:  5'- uCCGCGCGCGCGCcg-----CGCUCg -3'
miRNA:   3'- cGGUGCGUGCGCGucuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 13835 0.66 0.882715
Target:  5'- aCCAUGUgggGCGCGCAGuccgcCGCCUg -3'
miRNA:   3'- cGGUGCG---UGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 14432 0.68 0.792299
Target:  5'- uGCCGcCGCugGCGCcGGGUAccgagCGCCg- -3'
miRNA:   3'- -CGGU-GCGugCGCG-UCUAUua---GCGGga -5'
25960 3' -55.5 NC_005337.1 + 15471 0.67 0.842901
Target:  5'- gGCCACcgacgGCGCGCGCGGcacgacggCGCCg- -3'
miRNA:   3'- -CGGUG-----CGUGCGCGUCuauua---GCGGga -5'
25960 3' -55.5 NC_005337.1 + 15860 0.66 0.896427
Target:  5'- cGCCcaugcucugcauGCGCgACGUGguGAUGAucaUCGCCa- -3'
miRNA:   3'- -CGG------------UGCG-UGCGCguCUAUU---AGCGGga -5'
25960 3' -55.5 NC_005337.1 + 16963 0.67 0.860449
Target:  5'- cCCgACGCGUGCGCGGAgg--CGUCCa -3'
miRNA:   3'- cGG-UGCGUGCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 18927 0.68 0.810398
Target:  5'- uCCGCGgGCaCGCAGAUc--CGCCCg -3'
miRNA:   3'- cGGUGCgUGcGCGUCUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 20776 0.66 0.889687
Target:  5'- gGCCACGCGCuuCGCGGGgacggGcgUGCCg- -3'
miRNA:   3'- -CGGUGCGUGc-GCGUCUa----UuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 21177 0.68 0.819203
Target:  5'- cGUCGCGCggaccugcGCGCGCAGGUccgcguacUCGUCCc -3'
miRNA:   3'- -CGGUGCG--------UGCGCGUCUAuu------AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 21358 0.66 0.889687
Target:  5'- --aGCGCGaacuugugUGCGCAGAUcagCGCCCa -3'
miRNA:   3'- cggUGCGU--------GCGCGUCUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 21426 0.66 0.896427
Target:  5'- gGCCGCGgccaGCuCGCGGAgcuUCGCCUc -3'
miRNA:   3'- -CGGUGCg---UGcGCGUCUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 23061 0.68 0.801427
Target:  5'- cGCCGCGCGCcggaaCGCGGcgGccgUGCCCg -3'
miRNA:   3'- -CGGUGCGUGc----GCGUCuaUua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 23324 0.69 0.783022
Target:  5'- gGCCGCGCAgcUGCGCA------CGCCCa -3'
miRNA:   3'- -CGGUGCGU--GCGCGUcuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 23931 0.67 0.844537
Target:  5'- cCCGCgGCAgGCGCGcGcgAcgCGCCCg -3'
miRNA:   3'- cGGUG-CGUgCGCGU-CuaUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 24718 0.67 0.844537
Target:  5'- cCCGCGgAguucCGCGGGUAcgCGCCCUa -3'
miRNA:   3'- cGGUGCgUgc--GCGUCUAUuaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 25718 0.68 0.801427
Target:  5'- gGCCGCGCcgccaGCGuCAGGcGcgCGCCCc -3'
miRNA:   3'- -CGGUGCGug---CGC-GUCUaUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 28493 0.71 0.663569
Target:  5'- gGCCGCGCgGCGCGCGG----UCGCgCg -3'
miRNA:   3'- -CGGUGCG-UGCGCGUCuauuAGCGgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.