miRNA display CGI


Results 61 - 80 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 29180 0.68 0.810398
Target:  5'- cGCCGCGCgAC-CGCAGAgguUCaGUCCUc -3'
miRNA:   3'- -CGGUGCG-UGcGCGUCUauuAG-CGGGA- -5'
25960 3' -55.5 NC_005337.1 + 29215 0.7 0.673887
Target:  5'- cGCUGCGCAgcgcCGCGCGGccgggcGUCGCCUg -3'
miRNA:   3'- -CGGUGCGU----GCGCGUCuau---UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 29311 0.7 0.673887
Target:  5'- cGCCGCuCACGUGCcGGUAGUCggugagcagcagGCCCa -3'
miRNA:   3'- -CGGUGcGUGCGCGuCUAUUAG------------CGGGa -5'
25960 3' -55.5 NC_005337.1 + 29509 0.7 0.684171
Target:  5'- gGCCGCGC-CGUGCgAGAUcaugcAGUCGCgCUc -3'
miRNA:   3'- -CGGUGCGuGCGCG-UCUA-----UUAGCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 29651 0.69 0.754395
Target:  5'- uGCC--GCAgGCGCAGGUAGUacagcgGCCCg -3'
miRNA:   3'- -CGGugCGUgCGCGUCUAUUAg-----CGGGa -5'
25960 3' -55.5 NC_005337.1 + 29723 0.71 0.622119
Target:  5'- cGCgCACGCGCGCGCGGu--GUUGCg-- -3'
miRNA:   3'- -CG-GUGCGUGCGCGUCuauUAGCGgga -5'
25960 3' -55.5 NC_005337.1 + 29980 0.69 0.764061
Target:  5'- cGCCGCGCcCuCGCGGAc---CGCCCg -3'
miRNA:   3'- -CGGUGCGuGcGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 30086 0.7 0.724772
Target:  5'- cGCgGCGCuCGCGCAcGGUGAgcgcgCGCaCCUu -3'
miRNA:   3'- -CGgUGCGuGCGCGU-CUAUUa----GCG-GGA- -5'
25960 3' -55.5 NC_005337.1 + 30151 0.68 0.792299
Target:  5'- uCCACGCGCGCgggGUAGAUGucggaguagCGCUCg -3'
miRNA:   3'- cGGUGCGUGCG---CGUCUAUua-------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 30232 0.67 0.875515
Target:  5'- aGCgUGCGCGaggagacguucCGCGC-GAUGgcGUCGCCCUg -3'
miRNA:   3'- -CG-GUGCGU-----------GCGCGuCUAU--UAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 30276 0.74 0.471415
Target:  5'- uCCACG-GCGCGCAGGUGAgCGCCa- -3'
miRNA:   3'- cGGUGCgUGCGCGUCUAUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 30410 0.67 0.86506
Target:  5'- cGCCGCGCucCGCGaacugccgcuugaGGAUGAUgcCGUCCUc -3'
miRNA:   3'- -CGGUGCGu-GCGCg------------UCUAUUA--GCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 30644 0.67 0.84372
Target:  5'- aGCCgaggaugGCGCGCgGCGCGGAguugUGGUugaUGCCCa -3'
miRNA:   3'- -CGG-------UGCGUG-CGCGUCU----AUUA---GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 30939 0.66 0.889687
Target:  5'- aCCA-GCAgCGgGCGGGUGAgcCGCCCg -3'
miRNA:   3'- cGGUgCGU-GCgCGUCUAUUa-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 31006 0.75 0.434223
Target:  5'- gGCCACGUACGUGUAGAggUAGUgGgCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUCU--AUUAgCgGGa -5'
25960 3' -55.5 NC_005337.1 + 31095 0.67 0.844537
Target:  5'- uGUCGuCGUccaGCGUGCAG-UAGUUGCCCc -3'
miRNA:   3'- -CGGU-GCG---UGCGCGUCuAUUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 31838 0.68 0.792299
Target:  5'- gGCCGCGaugaGCGCGUucacguacucggGGAUGucccCGCCCg -3'
miRNA:   3'- -CGGUGCg---UGCGCG------------UCUAUua--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 32331 0.7 0.684171
Target:  5'- gGCCACGUGCggGCGCAGc---UCGUCCa -3'
miRNA:   3'- -CGGUGCGUG--CGCGUCuauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 32771 0.66 0.882005
Target:  5'- aGCCGCGCGgagcgcuCGCGCAuGAgcgcGAgcagCGCCUg -3'
miRNA:   3'- -CGGUGCGU-------GCGCGU-CUa---UUa---GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 33154 0.71 0.663569
Target:  5'- uCCGCGCAgcCGCGCucugAGUCGUCCUu -3'
miRNA:   3'- cGGUGCGU--GCGCGucuaUUAGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.