miRNA display CGI


Results 41 - 60 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 126123 0.67 0.860449
Target:  5'- cGCgCACGCcguGCGCGCGGcca--UGCCCg -3'
miRNA:   3'- -CG-GUGCG---UGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 125923 0.69 0.773606
Target:  5'- uGCCGCGC-CuCGCAGA---UUGCCCc -3'
miRNA:   3'- -CGGUGCGuGcGCGUCUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 124829 0.67 0.83628
Target:  5'- uGCUcCGCACgggcaucgagGCGCAGAUGGcCGCCa- -3'
miRNA:   3'- -CGGuGCGUG----------CGCGUCUAUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 124782 0.66 0.899056
Target:  5'- gGCCAUcgaGCucuGCGCGCAGAUGGgccggcgguggacgCGCCg- -3'
miRNA:   3'- -CGGUG---CG---UGCGCGUCUAUUa-------------GCGGga -5'
25960 3' -55.5 NC_005337.1 + 124435 0.71 0.642861
Target:  5'- cGCCGCGCGCggGUGCGGGgcc-UGCCCc -3'
miRNA:   3'- -CGGUGCGUG--CGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 124000 0.69 0.783022
Target:  5'- cGCCAUGCugaACGCGCcgccgccGAUGGaggCGCCCc -3'
miRNA:   3'- -CGGUGCG---UGCGCGu------CUAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 123298 0.71 0.642861
Target:  5'- uGCCgcACGCGCuGCGCGGAUcg-CGCCg- -3'
miRNA:   3'- -CGG--UGCGUG-CGCGUCUAuuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 123207 0.66 0.896427
Target:  5'- uGCCAgGCGgGC-CAGGgcuUCGUCCUc -3'
miRNA:   3'- -CGGUgCGUgCGcGUCUauuAGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 122863 0.67 0.875515
Target:  5'- aGCC-CGCGCGCcuGCGGAacccGggGCCCUg -3'
miRNA:   3'- -CGGuGCGUGCG--CGUCUau--UagCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 122799 0.67 0.844537
Target:  5'- uGCUGCGCGCGgccaucgacCGCAGcGUGcgCGUCCg -3'
miRNA:   3'- -CGGUGCGUGC---------GCGUC-UAUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 122373 0.66 0.90293
Target:  5'- cGCCACGCgcauguGCGUGCGcGA-GGUCGUgCUg -3'
miRNA:   3'- -CGGUGCG------UGCGCGU-CUaUUAGCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 121571 0.74 0.452611
Target:  5'- cGCgGCGCGCGCGCGGA----CGCCa- -3'
miRNA:   3'- -CGgUGCGUGCGCGUCUauuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 120674 0.66 0.896427
Target:  5'- cGCC-CgGCugGCGgAGAUGG-CGCuCCUg -3'
miRNA:   3'- -CGGuG-CGugCGCgUCUAUUaGCG-GGA- -5'
25960 3' -55.5 NC_005337.1 + 120518 0.74 0.490608
Target:  5'- cGCCGCGUucggGCGCGCGGAgaucaCGCUCa -3'
miRNA:   3'- -CGGUGCG----UGCGCGUCUauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 120472 0.66 0.901004
Target:  5'- aGCgCGCGCuggauCGCGCGGAcacgagcuacgaccUGG-CGCCCc -3'
miRNA:   3'- -CG-GUGCGu----GCGCGUCU--------------AUUaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 120430 0.66 0.889687
Target:  5'- aGCCG-GCAgGCgGCGGAcUGcgCGCCCc -3'
miRNA:   3'- -CGGUgCGUgCG-CGUCU-AUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 119387 0.68 0.81394
Target:  5'- cGCCGCGCcaacagcauggaguCGCGuCGGAagucUCGCCCg -3'
miRNA:   3'- -CGGUGCGu-------------GCGC-GUCUauu-AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 118934 0.71 0.663569
Target:  5'- cGUCGCGCGgGCGCAGcGUGcGUCGCgCg -3'
miRNA:   3'- -CGGUGCGUgCGCGUC-UAU-UAGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 118805 0.67 0.875515
Target:  5'- uGCCGCGCGCGCcGUcGGUGGccaGCCa- -3'
miRNA:   3'- -CGGUGCGUGCG-CGuCUAUUag-CGGga -5'
25960 3' -55.5 NC_005337.1 + 118194 0.67 0.860449
Target:  5'- aGCuCGCGCcgguGgGCGCGGAgc--CGCCCg -3'
miRNA:   3'- -CG-GUGCG----UgCGCGUCUauuaGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.