miRNA display CGI


Results 41 - 60 of 330 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 109319 0.78 0.283469
Target:  5'- aCCACGCACGCGguGAggauGUCGUUCa -3'
miRNA:   3'- cGGUGCGUGCGCguCUau--UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 6897 0.8 0.216862
Target:  5'- uGUCGCGCGCGCGCGGGUccgCGCCg- -3'
miRNA:   3'- -CGGUGCGUGCGCGUCUAuuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 41393 0.82 0.172761
Target:  5'- aCCGCGCGCGgGCAGAUGA-CGUCCg -3'
miRNA:   3'- cGGUGCGUGCgCGUCUAUUaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 54014 0.82 0.159937
Target:  5'- cGUCGCGCACGCGCAc---GUCGCCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUcuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 97060 0.84 0.133301
Target:  5'- cGCCACGCACGCGCGGcgcgcgGUGGUCugcguGCCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUC------UAUUAG-----CGGGa -5'
25960 3' -55.5 NC_005337.1 + 133458 0.74 0.487706
Target:  5'- gGCC-CGCGCGCGCGGAcggcuccgcggagcUGGUCuGCCUc -3'
miRNA:   3'- -CGGuGCGUGCGCGUCU--------------AUUAG-CGGGa -5'
25960 3' -55.5 NC_005337.1 + 98878 0.74 0.490608
Target:  5'- aCCGCGCcgcGCGCGCGGAcUGcgCGCUCg -3'
miRNA:   3'- cGGUGCG---UGCGCGUCU-AUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 33693 0.71 0.653224
Target:  5'- aGCCGCGaGCGCG-AGAUGAg-GCCCa -3'
miRNA:   3'- -CGGUGCgUGCGCgUCUAUUagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 123298 0.71 0.642861
Target:  5'- uGCCgcACGCGCuGCGCGGAUcg-CGCCg- -3'
miRNA:   3'- -CGG--UGCGUG-CGCGUCUAuuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 68399 0.71 0.642861
Target:  5'- cGCCcuGCGCGCGUGCGuGGUAGcgCGCgCCg -3'
miRNA:   3'- -CGG--UGCGUGCGCGU-CUAUUa-GCG-GGa -5'
25960 3' -55.5 NC_005337.1 + 52022 0.71 0.642861
Target:  5'- gGCCGCGCGCGCGCGGucaugGAguucCGggaCCUg -3'
miRNA:   3'- -CGGUGCGUGCGCGUCua---UUa---GCg--GGA- -5'
25960 3' -55.5 NC_005337.1 + 45491 0.71 0.642861
Target:  5'- aGCCGCuucugGUACGCGCGGAccugCGCCUc -3'
miRNA:   3'- -CGGUG-----CGUGCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 80044 0.71 0.640787
Target:  5'- -aCACGCugGCGCGGcgGAcgcugucauccgCGCCCa -3'
miRNA:   3'- cgGUGCGugCGCGUCuaUUa-----------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 29723 0.71 0.622119
Target:  5'- cGCgCACGCGCGCGCGGu--GUUGCg-- -3'
miRNA:   3'- -CG-GUGCGUGCGCGUCuauUAGCGgga -5'
25960 3' -55.5 NC_005337.1 + 34800 0.72 0.611756
Target:  5'- cGCCAucUGCGCGuCGCGGGUGGccagCGCCUc -3'
miRNA:   3'- -CGGU--GCGUGC-GCGUCUAUUa---GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 58316 0.72 0.611756
Target:  5'- cGCCGCGCGaguCGCGCAGcucGUAGUaCGUCUUc -3'
miRNA:   3'- -CGGUGCGU---GCGCGUC---UAUUA-GCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 100227 0.72 0.611756
Target:  5'- cGCCGCGUGCGCGU-GAUcgcGGUCccGCCCg -3'
miRNA:   3'- -CGGUGCGUGCGCGuCUA---UUAG--CGGGa -5'
25960 3' -55.5 NC_005337.1 + 126213 0.72 0.58079
Target:  5'- cGCCACGCGCGaguGCGuGAUGGagcUgGCCCUc -3'
miRNA:   3'- -CGGUGCGUGCg--CGU-CUAUU---AgCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 109899 0.73 0.540061
Target:  5'- cGCCACGUGCGCGUGGAagacguGUCGCgUg -3'
miRNA:   3'- -CGGUGCGUGCGCGUCUau----UAGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 133654 0.74 0.499363
Target:  5'- cGCCGCGCugGacgccgaCGCGGAgu-UCGCCUg -3'
miRNA:   3'- -CGGUGCGugC-------GCGUCUauuAGCGGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.