Results 61 - 80 of 330 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25960 | 3' | -55.5 | NC_005337.1 | + | 100227 | 0.72 | 0.611756 |
Target: 5'- cGCCGCGUGCGCGU-GAUcgcGGUCccGCCCg -3' miRNA: 3'- -CGGUGCGUGCGCGuCUA---UUAG--CGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 58316 | 0.72 | 0.611756 |
Target: 5'- cGCCGCGCGaguCGCGCAGcucGUAGUaCGUCUUc -3' miRNA: 3'- -CGGUGCGU---GCGCGUC---UAUUA-GCGGGA- -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 91750 | 0.71 | 0.653224 |
Target: 5'- gGCCACGCGCGCGUgcgccucgaAGcUGGaCGUCCg -3' miRNA: 3'- -CGGUGCGUGCGCG---------UCuAUUaGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 1331 | 0.71 | 0.663569 |
Target: 5'- uCCA-GCGCGCuGCAGAgcgGGUCGCCg- -3' miRNA: 3'- cGGUgCGUGCG-CGUCUa--UUAGCGGga -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 3572 | 0.71 | 0.663569 |
Target: 5'- uCCACGCACGCGgaCGGGgacuUGAgcagCGCCCc -3' miRNA: 3'- cGGUGCGUGCGC--GUCU----AUUa---GCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 28493 | 0.71 | 0.663569 |
Target: 5'- gGCCGCGCgGCGCGCGG----UCGCgCg -3' miRNA: 3'- -CGGUGCG-UGCGCGUCuauuAGCGgGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 77223 | 0.71 | 0.663569 |
Target: 5'- gGCCugGCuGCgGCGUAG-UAcgCGCCCa -3' miRNA: 3'- -CGGugCG-UG-CGCGUCuAUuaGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 48041 | 0.7 | 0.673887 |
Target: 5'- gGCgGCGaacgACGCGCGGAUAGaCGCCg- -3' miRNA: 3'- -CGgUGCg---UGCGCGUCUAUUaGCGGga -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 10907 | 0.7 | 0.673887 |
Target: 5'- cGCCGCGUcgcgcacgcucuGCGCGUcgaAGAUGAUCGuuuuCCCg -3' miRNA: 3'- -CGGUGCG------------UGCGCG---UCUAUUAGC----GGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 29215 | 0.7 | 0.673887 |
Target: 5'- cGCUGCGCAgcgcCGCGCGGccgggcGUCGCCUg -3' miRNA: 3'- -CGGUGCGU----GCGCGUCuau---UAGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 37702 | 0.71 | 0.653224 |
Target: 5'- cGCC-CGCGCGCGU-GA-GGUCGUCCa -3' miRNA: 3'- -CGGuGCGUGCGCGuCUaUUAGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 76998 | 0.71 | 0.653224 |
Target: 5'- aGCCGCGCGCgccggccccGCGCGGccccgUGCCCg -3' miRNA: 3'- -CGGUGCGUG---------CGCGUCuauuaGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 34800 | 0.72 | 0.611756 |
Target: 5'- cGCCAucUGCGCGuCGCGGGUGGccagCGCCUc -3' miRNA: 3'- -CGGU--GCGUGC-GCGUCUAUUa---GCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 29723 | 0.71 | 0.622119 |
Target: 5'- cGCgCACGCGCGCGCGGu--GUUGCg-- -3' miRNA: 3'- -CG-GUGCGUGCGCGUCuauUAGCGgga -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 80044 | 0.71 | 0.640787 |
Target: 5'- -aCACGCugGCGCGGcgGAcgcugucauccgCGCCCa -3' miRNA: 3'- cgGUGCGugCGCGUCuaUUa-----------GCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 45491 | 0.71 | 0.642861 |
Target: 5'- aGCCGCuucugGUACGCGCGGAccugCGCCUc -3' miRNA: 3'- -CGGUG-----CGUGCGCGUCUauuaGCGGGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 52022 | 0.71 | 0.642861 |
Target: 5'- gGCCGCGCGCGCGCGGucaugGAguucCGggaCCUg -3' miRNA: 3'- -CGGUGCGUGCGCGUCua---UUa---GCg--GGA- -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 68399 | 0.71 | 0.642861 |
Target: 5'- cGCCcuGCGCGCGUGCGuGGUAGcgCGCgCCg -3' miRNA: 3'- -CGG--UGCGUGCGCGU-CUAUUa-GCG-GGa -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 123298 | 0.71 | 0.642861 |
Target: 5'- uGCCgcACGCGCuGCGCGGAUcg-CGCCg- -3' miRNA: 3'- -CGG--UGCGUG-CGCGUCUAuuaGCGGga -5' |
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25960 | 3' | -55.5 | NC_005337.1 | + | 33693 | 0.71 | 0.653224 |
Target: 5'- aGCCGCGaGCGCG-AGAUGAg-GCCCa -3' miRNA: 3'- -CGGUGCgUGCGCgUCUAUUagCGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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