miRNA display CGI


Results 81 - 100 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 88036 0.7 0.673887
Target:  5'- uGCCgGCGCACGUGCAcggGGUCGUgCUg -3'
miRNA:   3'- -CGG-UGCGUGCGCGUcuaUUAGCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 130888 0.7 0.673887
Target:  5'- aUgGCGCACGCGCGcuuc-UCGCCCa -3'
miRNA:   3'- cGgUGCGUGCGCGUcuauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 60945 0.7 0.673887
Target:  5'- uGCCGCGCcggcAUGCGCAuGGggcgcgCGCCCa -3'
miRNA:   3'- -CGGUGCG----UGCGCGU-CUauua--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 109177 0.7 0.673887
Target:  5'- cGCCGCGC-CGCGCGGGcgga-GCUCg -3'
miRNA:   3'- -CGGUGCGuGCGCGUCUauuagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 58996 0.7 0.68109
Target:  5'- cGCUACGCGCGCaucaagagcgccguGCGGucguggCGCCCg -3'
miRNA:   3'- -CGGUGCGUGCG--------------CGUCuauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 95916 0.7 0.68109
Target:  5'- uCCACGCccgucgugugcgugAUGCGCAGcgcGUAcUCGCCCg -3'
miRNA:   3'- cGGUGCG--------------UGCGCGUC---UAUuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 32331 0.7 0.684171
Target:  5'- gGCCACGUGCggGCGCAGc---UCGUCCa -3'
miRNA:   3'- -CGGUGCGUG--CGCGUCuauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 29215 0.7 0.673887
Target:  5'- cGCUGCGCAgcgcCGCGCGGccgggcGUCGCCUg -3'
miRNA:   3'- -CGGUGCGU----GCGCGUCuau---UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 10907 0.7 0.673887
Target:  5'- cGCCGCGUcgcgcacgcucuGCGCGUcgaAGAUGAUCGuuuuCCCg -3'
miRNA:   3'- -CGGUGCG------------UGCGCG---UCUAUUAGC----GGGa -5'
25960 3' -55.5 NC_005337.1 + 48041 0.7 0.673887
Target:  5'- gGCgGCGaacgACGCGCGGAUAGaCGCCg- -3'
miRNA:   3'- -CGgUGCg---UGCGCGUCUAUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 123298 0.71 0.642861
Target:  5'- uGCCgcACGCGCuGCGCGGAUcg-CGCCg- -3'
miRNA:   3'- -CGG--UGCGUG-CGCGUCUAuuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 33693 0.71 0.653224
Target:  5'- aGCCGCGaGCGCG-AGAUGAg-GCCCa -3'
miRNA:   3'- -CGGUGCgUGCGCgUCUAUUagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 76998 0.71 0.653224
Target:  5'- aGCCGCGCGCgccggccccGCGCGGccccgUGCCCg -3'
miRNA:   3'- -CGGUGCGUG---------CGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 37702 0.71 0.653224
Target:  5'- cGCC-CGCGCGCGU-GA-GGUCGUCCa -3'
miRNA:   3'- -CGGuGCGUGCGCGuCUaUUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 91750 0.71 0.653224
Target:  5'- gGCCACGCGCGCGUgcgccucgaAGcUGGaCGUCCg -3'
miRNA:   3'- -CGGUGCGUGCGCG---------UCuAUUaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 1331 0.71 0.663569
Target:  5'- uCCA-GCGCGCuGCAGAgcgGGUCGCCg- -3'
miRNA:   3'- cGGUgCGUGCG-CGUCUa--UUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 3572 0.71 0.663569
Target:  5'- uCCACGCACGCGgaCGGGgacuUGAgcagCGCCCc -3'
miRNA:   3'- cGGUGCGUGCGC--GUCU----AUUa---GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 28493 0.71 0.663569
Target:  5'- gGCCGCGCgGCGCGCGG----UCGCgCg -3'
miRNA:   3'- -CGGUGCG-UGCGCGUCuauuAGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 77223 0.71 0.663569
Target:  5'- gGCCugGCuGCgGCGUAG-UAcgCGCCCa -3'
miRNA:   3'- -CGGugCG-UG-CGCGUCuAUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 69284 0.7 0.684171
Target:  5'- cGCCGCGCGCgacgggcaguucGCGCGGGaGAagGCCUUc -3'
miRNA:   3'- -CGGUGCGUG------------CGCGUCUaUUagCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.