miRNA display CGI


Results 21 - 40 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 82120 0.73 0.520051
Target:  5'- aGCCGCGCugGCGCAuGAg---CGCgCg -3'
miRNA:   3'- -CGGUGCGugCGCGU-CUauuaGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 120518 0.74 0.490608
Target:  5'- cGCCGCGUucggGCGCGCGGAgaucaCGCUCa -3'
miRNA:   3'- -CGGUGCG----UGCGCGUCUauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 99475 0.75 0.422506
Target:  5'- gGCCAccCGCgACGCGCAGAUGgcgaccaugauccuGUCGCCg- -3'
miRNA:   3'- -CGGU--GCG-UGCGCGUCUAU--------------UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 53595 0.77 0.341425
Target:  5'- cGCaCAUGCGCGCGCGGAaGcgCGCCg- -3'
miRNA:   3'- -CG-GUGCGUGCGCGUCUaUuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 12286 0.71 0.653224
Target:  5'- cCCGCGCGCaggagcucGCGCAcGAUGuccgcguUCGCCCg -3'
miRNA:   3'- cGGUGCGUG--------CGCGU-CUAUu------AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 91884 0.72 0.58079
Target:  5'- gGCCGCGCGC-CGCGGcgccuccgGGUCGCCg- -3'
miRNA:   3'- -CGGUGCGUGcGCGUCua------UUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 133458 0.74 0.487706
Target:  5'- gGCC-CGCGCGCGCGGAcggcuccgcggagcUGGUCuGCCUc -3'
miRNA:   3'- -CGGuGCGUGCGCGUCU--------------AUUAG-CGGGa -5'
25960 3' -55.5 NC_005337.1 + 3537 0.77 0.333733
Target:  5'- gGCCACGUA-GCGCAGGUAgaucucGUCGCCg- -3'
miRNA:   3'- -CGGUGCGUgCGCGUCUAU------UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 65707 0.72 0.58079
Target:  5'- uGCaCAgcCGCACGCGguGggGcgCGCCCg -3'
miRNA:   3'- -CG-GU--GCGUGCGCguCuaUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 86671 0.78 0.311424
Target:  5'- cGCgGcCGCGCGCGCGGc--GUCGCCCa -3'
miRNA:   3'- -CGgU-GCGUGCGCGUCuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 72604 0.74 0.490608
Target:  5'- gGUCGCGCGCGgGCGuGGUGGU-GCCCg -3'
miRNA:   3'- -CGGUGCGUGCgCGU-CUAUUAgCGGGa -5'
25960 3' -55.5 NC_005337.1 + 77909 0.73 0.530021
Target:  5'- cCCGCGCGCGCcaucuucaGCAGGUuGUUGUCCg -3'
miRNA:   3'- cGGUGCGUGCG--------CGUCUAuUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 86517 0.74 0.461963
Target:  5'- -aCGCGUugGCGCGGcgGG-CGCCCUu -3'
miRNA:   3'- cgGUGCGugCGCGUCuaUUaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 65879 0.75 0.434223
Target:  5'- aCCACGCacGCGCGCAGGgcggacGUCGCaCCg -3'
miRNA:   3'- cGGUGCG--UGCGCGUCUau----UAGCG-GGa -5'
25960 3' -55.5 NC_005337.1 + 116608 0.75 0.407474
Target:  5'- cGCCGCGgugcgGCGCGUGGAcguGUCGCCCg -3'
miRNA:   3'- -CGGUGCg----UGCGCGUCUau-UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 46661 0.76 0.365262
Target:  5'- gGCUGCGCGCgaucGCGCAGc-AGUCGCCCg -3'
miRNA:   3'- -CGGUGCGUG----CGCGUCuaUUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 8258 0.7 0.682118
Target:  5'- -aCACGCACGCGCGGGgguugaacgCGgCCg -3'
miRNA:   3'- cgGUGCGUGCGCGUCUauua-----GCgGGa -5'
25960 3' -55.5 NC_005337.1 + 118934 0.71 0.663569
Target:  5'- cGUCGCGCGgGCGCAGcGUGcGUCGCgCg -3'
miRNA:   3'- -CGGUGCGUgCGCGUC-UAU-UAGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 109875 0.72 0.611756
Target:  5'- cGCCAUGCACcggaGCauGguGAUcuGGUCGCCCg -3'
miRNA:   3'- -CGGUGCGUG----CG--CguCUA--UUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 53657 0.72 0.58079
Target:  5'- cGCCACGCGCGCuucGCGGcGUGcUCGCUg- -3'
miRNA:   3'- -CGGUGCGUGCG---CGUC-UAUuAGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.