miRNA display CGI


Results 61 - 80 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 118934 0.71 0.663569
Target:  5'- cGUCGCGCGgGCGCAGcGUGcGUCGCgCg -3'
miRNA:   3'- -CGGUGCGUgCGCGUC-UAU-UAGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 89964 0.7 0.694411
Target:  5'- gGCCGCaGCACGCGCucGGggGAgcggCGCCg- -3'
miRNA:   3'- -CGGUG-CGUGCGCG--UCuaUUa---GCGGga -5'
25960 3' -55.5 NC_005337.1 + 39142 0.76 0.373459
Target:  5'- aGCCugGUgaugcagaacucGCGCGCGGAcaUGAUCGCCg- -3'
miRNA:   3'- -CGGugCG------------UGCGCGUCU--AUUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 81556 0.75 0.416276
Target:  5'- cGgCGCGCAgcuCGCGCAGGUAGgccUCGUCCg -3'
miRNA:   3'- -CgGUGCGU---GCGCGUCUAUU---AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 132770 0.75 0.443363
Target:  5'- cGCgCugGCGCGCGCcgAGGUGAcggUGCCCa -3'
miRNA:   3'- -CG-GugCGUGCGCG--UCUAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 90079 0.74 0.480965
Target:  5'- gGCCagacgcauuGCGCGCGUGCAGAgacucAUCGCCa- -3'
miRNA:   3'- -CGG---------UGCGUGCGCGUCUau---UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 133654 0.74 0.499363
Target:  5'- cGCCGCGCugGacgccgaCGCGGAgu-UCGCCUg -3'
miRNA:   3'- -CGGUGCGugC-------GCGUCUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 77909 0.73 0.530021
Target:  5'- cCCGCGCGCGCcaucuucaGCAGGUuGUUGUCCg -3'
miRNA:   3'- cGGUGCGUGCG--------CGUCUAuUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 91884 0.72 0.58079
Target:  5'- gGCCGCGCGC-CGCGGcgccuccgGGUCGCCg- -3'
miRNA:   3'- -CGGUGCGUGcGCGUCua------UUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 84751 0.72 0.601408
Target:  5'- cCCGCGCGCGCGC-GAUGGUgUGCUUg -3'
miRNA:   3'- cGGUGCGUGCGCGuCUAUUA-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 105405 0.68 0.792299
Target:  5'- aCCAcuCGCGCGCGC---UGAUCGCCg- -3'
miRNA:   3'- cGGU--GCGUGCGCGucuAUUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 30151 0.68 0.792299
Target:  5'- uCCACGCGCGCgggGUAGAUGucggaguagCGCUCg -3'
miRNA:   3'- cGGUGCGUGCG---CGUCUAUua-------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 35115 0.7 0.714721
Target:  5'- uCCGCGCG-GCGCGGA----CGCCCa -3'
miRNA:   3'- cGGUGCGUgCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 127160 0.7 0.714721
Target:  5'- uCCGCGCGgGCGCGGA----CGUCCg -3'
miRNA:   3'- cGGUGCGUgCGCGUCUauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 52506 0.69 0.734741
Target:  5'- cGCCAugcgcaaccUGCACGCGCAGGaGAacggCGCCg- -3'
miRNA:   3'- -CGGU---------GCGUGCGCGUCUaUUa---GCGGga -5'
25960 3' -55.5 NC_005337.1 + 985 0.69 0.744619
Target:  5'- gGCUgGCGCgGCGCGCGGAgggcgggcGUCGCCUg -3'
miRNA:   3'- -CGG-UGCG-UGCGCGUCUau------UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 110509 0.69 0.754395
Target:  5'- cGUgGCGCuCGCGCGuGGUGAacacggCGCCCa -3'
miRNA:   3'- -CGgUGCGuGCGCGU-CUAUUa-----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 38947 0.69 0.754395
Target:  5'- cGCUACuGCgACGCGCAccGAUcggCGCCCg -3'
miRNA:   3'- -CGGUG-CG-UGCGCGU--CUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 11521 0.69 0.773606
Target:  5'- cGCCGgGCA-GCGCAGGguggccgccaGGUCGUCCg -3'
miRNA:   3'- -CGGUgCGUgCGCGUCUa---------UUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 5969 0.69 0.783022
Target:  5'- cGCCGCGCGCGaGCAGAcGGgccaggCGCgCg -3'
miRNA:   3'- -CGGUGCGUGCgCGUCUaUUa-----GCGgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.