miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 5' -48.6 NC_005337.1 + 53755 0.66 0.999093
Target:  5'- cGGAGAUgcagCUgCGCGUcGUGCGguuCCUg -3'
miRNA:   3'- -CCUCUAaa--GA-GUGUA-CACGCacuGGG- -5'
25960 5' -48.6 NC_005337.1 + 77409 0.66 0.999093
Target:  5'- gGGAGGU-----GgAUGUGCG-GGCCCa -3'
miRNA:   3'- -CCUCUAaagagUgUACACGCaCUGGG- -5'
25960 5' -48.6 NC_005337.1 + 65137 0.66 0.99889
Target:  5'- cGAGAcgcgCUCccaguACAUG-GCGUGGCUCu -3'
miRNA:   3'- cCUCUaaa-GAG-----UGUACaCGCACUGGG- -5'
25960 5' -48.6 NC_005337.1 + 77612 0.66 0.99889
Target:  5'- cGGAGGUcaugcUCUCguagaGCAgcgaGUGCGUGACg- -3'
miRNA:   3'- -CCUCUAa----AGAG-----UGUa---CACGCACUGgg -5'
25960 5' -48.6 NC_005337.1 + 101459 0.66 0.99889
Target:  5'- aGGAGGgg---CGCGaGUGCGUGgACCa -3'
miRNA:   3'- -CCUCUaaagaGUGUaCACGCAC-UGGg -5'
25960 5' -48.6 NC_005337.1 + 98112 0.66 0.998365
Target:  5'- cGGAcGAgaUCUCGCAgcgggGUGagcaugGACCCg -3'
miRNA:   3'- -CCU-CUaaAGAGUGUa----CACgca---CUGGG- -5'
25960 5' -48.6 NC_005337.1 + 120906 0.66 0.998365
Target:  5'- cGGAGGgaugUCUgaacgcCGCGUGUcccggcGCGUG-CCCg -3'
miRNA:   3'- -CCUCUaa--AGA------GUGUACA------CGCACuGGG- -5'
25960 5' -48.6 NC_005337.1 + 30242 0.66 0.998365
Target:  5'- aGGAGAcgUUCcgCGCgAUG-GCGUcGCCCu -3'
miRNA:   3'- -CCUCUa-AAGa-GUG-UACaCGCAcUGGG- -5'
25960 5' -48.6 NC_005337.1 + 53942 0.67 0.997646
Target:  5'- cGGGGAguucugCUCGCGccUGUGCcGcGACUCg -3'
miRNA:   3'- -CCUCUaaa---GAGUGU--ACACG-CaCUGGG- -5'
25960 5' -48.6 NC_005337.1 + 20496 0.67 0.99668
Target:  5'- uGAGcgUUUUCAgA--UGCGUGACCg -3'
miRNA:   3'- cCUCuaAAGAGUgUacACGCACUGGg -5'
25960 5' -48.6 NC_005337.1 + 92933 0.67 0.99668
Target:  5'- aGGAGG--UCgacCGCAUGUacucCGUGAUCCg -3'
miRNA:   3'- -CCUCUaaAGa--GUGUACAc---GCACUGGG- -5'
25960 5' -48.6 NC_005337.1 + 16427 0.68 0.995407
Target:  5'- cGGuGAUcaUCUCGCAcGUGC-UGaACCCg -3'
miRNA:   3'- -CCuCUAa-AGAGUGUaCACGcAC-UGGG- -5'
25960 5' -48.6 NC_005337.1 + 49648 0.69 0.990444
Target:  5'- uGGAGAc--CUC-CGUGaGCGUGACgCCc -3'
miRNA:   3'- -CCUCUaaaGAGuGUACaCGCACUG-GG- -5'
25960 5' -48.6 NC_005337.1 + 114307 0.7 0.979795
Target:  5'- uGGAGGagcUCUCGCGgcgccgGUGCGgaGCCCu -3'
miRNA:   3'- -CCUCUaa-AGAGUGUa-----CACGCacUGGG- -5'
25960 5' -48.6 NC_005337.1 + 38406 0.72 0.93585
Target:  5'- cGGAGAcgUUCUCugAcGUGCGUG-CUa -3'
miRNA:   3'- -CCUCUa-AAGAGugUaCACGCACuGGg -5'
25960 5' -48.6 NC_005337.1 + 126317 1.17 0.00479
Target:  5'- aGGAGAUUUCUCACAUGUGCGUGACCCg -3'
miRNA:   3'- -CCUCUAAAGAGUGUACACGCACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.