miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25961 3' -56.2 NC_005337.1 + 101701 0.66 0.898509
Target:  5'- -cCGGCAGugcACCGUGU-CGGAGgCCCg -3'
miRNA:   3'- acGUUGUC---UGGCACAcGCCUUgGGGg -5'
25961 3' -56.2 NC_005337.1 + 3487 0.66 0.898509
Target:  5'- cGCAGCAG-CCGcaccgGCGGcGCCCa- -3'
miRNA:   3'- aCGUUGUCuGGCaca--CGCCuUGGGgg -5'
25961 3' -56.2 NC_005337.1 + 108984 0.66 0.898509
Target:  5'- cGCGGCccgcccGCCGUGcGCGcGAACUCCa -3'
miRNA:   3'- aCGUUGuc----UGGCACaCGC-CUUGGGGg -5'
25961 3' -56.2 NC_005337.1 + 115046 0.66 0.898509
Target:  5'- cUGCcagGGCAuGGCCGUcGUGCucAGCCCCUu -3'
miRNA:   3'- -ACG---UUGU-CUGGCA-CACGccUUGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 14183 0.66 0.898509
Target:  5'- aGUAGCGuGuCCGUGUcGCaGGggUCCgCCg -3'
miRNA:   3'- aCGUUGU-CuGGCACA-CG-CCuuGGG-GG- -5'
25961 3' -56.2 NC_005337.1 + 47677 0.66 0.891911
Target:  5'- aUGCuGGCGGGcguCCGcGUGCGGuacgacggcGACCCCa -3'
miRNA:   3'- -ACG-UUGUCU---GGCaCACGCC---------UUGGGGg -5'
25961 3' -56.2 NC_005337.1 + 72376 0.66 0.891911
Target:  5'- cGCgGACGG-CCGUc-GCGGucagcgAGCCCCCg -3'
miRNA:   3'- aCG-UUGUCuGGCAcaCGCC------UUGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 57064 0.66 0.891911
Target:  5'- cGCAGcCAGGCCGcucUGCG-AGCgCCCg -3'
miRNA:   3'- aCGUU-GUCUGGCac-ACGCcUUGgGGG- -5'
25961 3' -56.2 NC_005337.1 + 10398 0.66 0.891911
Target:  5'- gUGCu-CGGGCUGUggagGUGCGGcuGCgCCCa -3'
miRNA:   3'- -ACGuuGUCUGGCA----CACGCCu-UGgGGG- -5'
25961 3' -56.2 NC_005337.1 + 58927 0.66 0.891911
Target:  5'- cGCGGC-GACCGUGgacgaggaccUGCuGGACCUCa -3'
miRNA:   3'- aCGUUGuCUGGCAC----------ACGcCUUGGGGg -5'
25961 3' -56.2 NC_005337.1 + 3121 0.66 0.889886
Target:  5'- aGCAGCAGcgugugcagcacgcGCCGguacagcgaGUGCaGGAACCCg- -3'
miRNA:   3'- aCGUUGUC--------------UGGCa--------CACG-CCUUGGGgg -5'
25961 3' -56.2 NC_005337.1 + 70065 0.66 0.885083
Target:  5'- cGUcGCGGACCGcgaacucGUGCGcGACCCUg -3'
miRNA:   3'- aCGuUGUCUGGCa------CACGCcUUGGGGg -5'
25961 3' -56.2 NC_005337.1 + 47466 0.66 0.885083
Target:  5'- --gGGCGGGuCCGUGUcgcugccgucGCGGGACCUgCCg -3'
miRNA:   3'- acgUUGUCU-GGCACA----------CGCCUUGGG-GG- -5'
25961 3' -56.2 NC_005337.1 + 74128 0.66 0.885083
Target:  5'- cGCAACGGcGCCGUGUacucgcacggcaGCGaGGucACCgCCg -3'
miRNA:   3'- aCGUUGUC-UGGCACA------------CGC-CU--UGGgGG- -5'
25961 3' -56.2 NC_005337.1 + 84648 0.66 0.884388
Target:  5'- uUGUAGCAGAaaguuucaaucuuCUGUGccGCGGGcGCCuCCCa -3'
miRNA:   3'- -ACGUUGUCU-------------GGCACa-CGCCU-UGG-GGG- -5'
25961 3' -56.2 NC_005337.1 + 79756 0.66 0.878031
Target:  5'- gUGCGGCauauGGACCc-GU-CGGAgGCCCCCa -3'
miRNA:   3'- -ACGUUG----UCUGGcaCAcGCCU-UGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 29742 0.66 0.878031
Target:  5'- uUGCGGCGGACCa---GCGGGccggGCUCCUc -3'
miRNA:   3'- -ACGUUGUCUGGcacaCGCCU----UGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 90322 0.66 0.878031
Target:  5'- cGCcgUAGAUgGUGcGCgGGAACCgCCa -3'
miRNA:   3'- aCGuuGUCUGgCACaCG-CCUUGGgGG- -5'
25961 3' -56.2 NC_005337.1 + 95622 0.66 0.878031
Target:  5'- gGCGGCGu-CCGUGgGCGcGGGCCCgCu -3'
miRNA:   3'- aCGUUGUcuGGCACaCGC-CUUGGGgG- -5'
25961 3' -56.2 NC_005337.1 + 66426 0.66 0.870757
Target:  5'- cGCuGCAGGCCGUGaagGCGGu-CUUCg -3'
miRNA:   3'- aCGuUGUCUGGCACa--CGCCuuGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.