miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25961 3' -56.2 NC_005337.1 + 114417 0.69 0.739731
Target:  5'- gUGCA--GGugCGUaacaGCGGAACCCCa -3'
miRNA:   3'- -ACGUugUCugGCAca--CGCCUUGGGGg -5'
25961 3' -56.2 NC_005337.1 + 2457 0.7 0.669486
Target:  5'- gUGCAGC--GCCGUGuUGCcGAaGCCCCCc -3'
miRNA:   3'- -ACGUUGucUGGCAC-ACGcCU-UGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 97699 0.7 0.679684
Target:  5'- cGCGcugGCGGACCGgcuagGUGCGGAccuggucuUCCUCg -3'
miRNA:   3'- aCGU---UGUCUGGCa----CACGCCUu-------GGGGG- -5'
25961 3' -56.2 NC_005337.1 + 84896 0.7 0.689844
Target:  5'- cGCGGgGGGCgGUGcgGCGGucgccGCCUCCg -3'
miRNA:   3'- aCGUUgUCUGgCACa-CGCCu----UGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 128796 0.7 0.689844
Target:  5'- cGCGAUcauGGGCgG-GUGCGGcugcgcccuGCCCCCg -3'
miRNA:   3'- aCGUUG---UCUGgCaCACGCCu--------UGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 38607 0.69 0.709005
Target:  5'- cGCAGCGuGGgCGUGcUGgggaaccCGGAGCCCCUg -3'
miRNA:   3'- aCGUUGU-CUgGCAC-AC-------GCCUUGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 32324 0.69 0.729905
Target:  5'- aGCGGCAGGCCacGUGCGGGcgcaGCUcgUCCa -3'
miRNA:   3'- aCGUUGUCUGGcaCACGCCU----UGG--GGG- -5'
25961 3' -56.2 NC_005337.1 + 39651 0.69 0.739731
Target:  5'- aGCGGCGcGGCCGcGUGgGGcgcguGGCCCCg -3'
miRNA:   3'- aCGUUGU-CUGGCaCACgCC-----UUGGGGg -5'
25961 3' -56.2 NC_005337.1 + 91718 0.69 0.739731
Target:  5'- ---uGCAGGCCG-GUGgGGuagcgcacguAGCCCCCg -3'
miRNA:   3'- acguUGUCUGGCaCACgCC----------UUGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 73460 0.7 0.649006
Target:  5'- cGCGGCGGuGCCGcGUgcccGCGGAggACCCCa -3'
miRNA:   3'- aCGUUGUC-UGGCaCA----CGCCU--UGGGGg -5'
25961 3' -56.2 NC_005337.1 + 123687 0.71 0.628472
Target:  5'- cGCGGCgGGACCGggcucGUcGCGGAgauccGCCUCCa -3'
miRNA:   3'- aCGUUG-UCUGGCa----CA-CGCCU-----UGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 10442 0.71 0.618206
Target:  5'- cGCGGCGGugCGcgcgucGUGCGccaGGACCUCCg -3'
miRNA:   3'- aCGUUGUCugGCa-----CACGC---CUUGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 63924 0.74 0.450665
Target:  5'- gUGCGGCGGcgcACCGccGUGCGGAACgCCg -3'
miRNA:   3'- -ACGUUGUC---UGGCa-CACGCCUUGgGGg -5'
25961 3' -56.2 NC_005337.1 + 50594 0.74 0.478673
Target:  5'- cGCGACGcGCCGaagcgGCGGaAGCCCCCu -3'
miRNA:   3'- aCGUUGUcUGGCaca--CGCC-UUGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 118177 0.72 0.534074
Target:  5'- cGCGGCGGAcCCGUucgagcucgcgccgGUgggcGCGGAGCCgCCCg -3'
miRNA:   3'- aCGUUGUCU-GGCA--------------CA----CGCCUUGG-GGG- -5'
25961 3' -56.2 NC_005337.1 + 76730 0.72 0.557084
Target:  5'- aGCAGCAGcCCGUGcaUGCGGuccaGGCCCa- -3'
miRNA:   3'- aCGUUGUCuGGCAC--ACGCC----UUGGGgg -5'
25961 3' -56.2 NC_005337.1 + 102401 0.72 0.557084
Target:  5'- cGCGA-AGACCGUGcccacggGCGGGgacAUCCCCg -3'
miRNA:   3'- aCGUUgUCUGGCACa------CGCCU---UGGGGG- -5'
25961 3' -56.2 NC_005337.1 + 108852 0.72 0.577319
Target:  5'- gGCGACAcGCCGUcGUgcgaGCGGAACCCg- -3'
miRNA:   3'- aCGUUGUcUGGCA-CA----CGCCUUGGGgg -5'
25961 3' -56.2 NC_005337.1 + 68910 0.71 0.596689
Target:  5'- aGCGACAagcgcguGugCGUGUGCGGcaucGACCCg- -3'
miRNA:   3'- aCGUUGU-------CugGCACACGCC----UUGGGgg -5'
25961 3' -56.2 NC_005337.1 + 114552 0.71 0.60795
Target:  5'- gGUGACGGGCCGga-GCaGGAcuuaccGCCCCCg -3'
miRNA:   3'- aCGUUGUCUGGCacaCG-CCU------UGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.