miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25961 5' -58.1 NC_005337.1 + 58239 0.66 0.820769
Target:  5'- aUGGAgcgcaaGUCCgGCGCGG-CGGUCu-- -3'
miRNA:   3'- gACCUa-----UAGGaCGCGCCgGCCAGcac -5'
25961 5' -58.1 NC_005337.1 + 74960 0.66 0.820769
Target:  5'- gCUGGGgcUCCgcgGCuacgcgauaGCGGCCgGGUCGa- -3'
miRNA:   3'- -GACCUauAGGa--CG---------CGCCGG-CCAGCac -5'
25961 5' -58.1 NC_005337.1 + 28486 0.66 0.812181
Target:  5'- -cGGAUGcggCC-GCGCGGCgcgCGGUCGc- -3'
miRNA:   3'- gaCCUAUa--GGaCGCGCCG---GCCAGCac -5'
25961 5' -58.1 NC_005337.1 + 102533 0.66 0.803432
Target:  5'- -cGGAguccaucuUCCUGCGCGaGgaGGUCGUc -3'
miRNA:   3'- gaCCUau------AGGACGCGC-CggCCAGCAc -5'
25961 5' -58.1 NC_005337.1 + 132527 0.66 0.794529
Target:  5'- cCUGGucgGUCCUGCugucgGUGGCCGcggugguuGUCGUc -3'
miRNA:   3'- -GACCua-UAGGACG-----CGCCGGC--------CAGCAc -5'
25961 5' -58.1 NC_005337.1 + 130952 0.66 0.785483
Target:  5'- cCUGGAcg-CCgGCGUGGCCguGGaCGUGc -3'
miRNA:   3'- -GACCUauaGGaCGCGCCGG--CCaGCAC- -5'
25961 5' -58.1 NC_005337.1 + 6839 0.67 0.766992
Target:  5'- aUGGAU-UCCUuggccCGCGGCaCGGUCGc- -3'
miRNA:   3'- gACCUAuAGGAc----GCGCCG-GCCAGCac -5'
25961 5' -58.1 NC_005337.1 + 77797 0.67 0.757564
Target:  5'- uUGGcgAUAUCCUgGCGCcGCgGGUCGcUGg -3'
miRNA:   3'- gACC--UAUAGGA-CGCGcCGgCCAGC-AC- -5'
25961 5' -58.1 NC_005337.1 + 85537 0.67 0.748028
Target:  5'- uCUGGAUGUUgaGCGCGG-CGGUg--- -3'
miRNA:   3'- -GACCUAUAGgaCGCGCCgGCCAgcac -5'
25961 5' -58.1 NC_005337.1 + 110951 0.67 0.718854
Target:  5'- uUGGGcGUgcgcagCUGCGCGGCCGcGUCGa- -3'
miRNA:   3'- gACCUaUAg-----GACGCGCCGGC-CAGCac -5'
25961 5' -58.1 NC_005337.1 + 38159 0.68 0.708972
Target:  5'- -cGGc-AUCCUGCGCGGCCGcaUGUc -3'
miRNA:   3'- gaCCuaUAGGACGCGCCGGCcaGCAc -5'
25961 5' -58.1 NC_005337.1 + 131604 0.68 0.699024
Target:  5'- -cGGAcGUCCUGCG-GGCUGGaCGa- -3'
miRNA:   3'- gaCCUaUAGGACGCgCCGGCCaGCac -5'
25961 5' -58.1 NC_005337.1 + 41540 0.68 0.678973
Target:  5'- -cGGAUGUCg-GuCGCGGCCacgaGGUCGUc -3'
miRNA:   3'- gaCCUAUAGgaC-GCGCCGG----CCAGCAc -5'
25961 5' -58.1 NC_005337.1 + 40538 0.69 0.65877
Target:  5'- -aGGAgg-CUUGCGcCGGCgGGUCGcUGg -3'
miRNA:   3'- gaCCUauaGGACGC-GCCGgCCAGC-AC- -5'
25961 5' -58.1 NC_005337.1 + 132962 0.7 0.597911
Target:  5'- gCUGGAccUCCUGCGCcGCCGGaUGg- -3'
miRNA:   3'- -GACCUauAGGACGCGcCGGCCaGCac -5'
25961 5' -58.1 NC_005337.1 + 44474 0.7 0.587812
Target:  5'- gCUGGAggccaGUUCgagGCGCGGCCGcGUCa-- -3'
miRNA:   3'- -GACCUa----UAGGa--CGCGCCGGC-CAGcac -5'
25961 5' -58.1 NC_005337.1 + 10429 0.7 0.547796
Target:  5'- -aGGAggacgCCUGCGCGGCggugcgCGcGUCGUGc -3'
miRNA:   3'- gaCCUaua--GGACGCGCCG------GC-CAGCAC- -5'
25961 5' -58.1 NC_005337.1 + 68237 0.76 0.27323
Target:  5'- -cGGGU-UCCggaGCGCGGCCGGcgCGUGg -3'
miRNA:   3'- gaCCUAuAGGa--CGCGCCGGCCa-GCAC- -5'
25961 5' -58.1 NC_005337.1 + 128644 1.07 0.002216
Target:  5'- gCUGGAUAUCCUGCGCGGCCGGUCGUGc -3'
miRNA:   3'- -GACCUAUAGGACGCGCCGGCCAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.