miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25962 3' -53.4 NC_005337.1 + 133325 0.66 0.970218
Target:  5'- aGCCCCGccGCCGCCAGCaUGUcCGc -3'
miRNA:   3'- cUGGGGUacUGGUGGUUGcACAaGCc -5'
25962 3' -53.4 NC_005337.1 + 133325 0.66 0.970218
Target:  5'- aGCCCCGccGCCGCCAGCaUGUcCGc -3'
miRNA:   3'- cUGGGGUacUGGUGGUUGcACAaGCc -5'
25962 3' -53.4 NC_005337.1 + 64565 0.66 0.970218
Target:  5'- gGACCgCGUGGCCGCCAcCGacaGUcUCGa -3'
miRNA:   3'- -CUGGgGUACUGGUGGUuGCa--CA-AGCc -5'
25962 3' -53.4 NC_005337.1 + 19769 0.66 0.967155
Target:  5'- gGACCCCAUGGaC-CCGACGccgcUGgacUCGGc -3'
miRNA:   3'- -CUGGGGUACUgGuGGUUGC----ACa--AGCC- -5'
25962 3' -53.4 NC_005337.1 + 53109 0.66 0.967155
Target:  5'- -uCCCCAUGGgCAUCcGCGUGcagaagCGGu -3'
miRNA:   3'- cuGGGGUACUgGUGGuUGCACaa----GCC- -5'
25962 3' -53.4 NC_005337.1 + 66513 0.66 0.967155
Target:  5'- gGugCCCGUGAaguUCAUCAGCGaGUUCu- -3'
miRNA:   3'- -CugGGGUACU---GGUGGUUGCaCAAGcc -5'
25962 3' -53.4 NC_005337.1 + 54688 0.66 0.967155
Target:  5'- cGACCCCuacACCACgGACGUGa---- -3'
miRNA:   3'- -CUGGGGuacUGGUGgUUGCACaagcc -5'
25962 3' -53.4 NC_005337.1 + 47709 0.66 0.967155
Target:  5'- cGACCCCAcagUGugCugCGGgGgcUUCGGa -3'
miRNA:   3'- -CUGGGGU---ACugGugGUUgCacAAGCC- -5'
25962 3' -53.4 NC_005337.1 + 117634 0.66 0.964214
Target:  5'- cGCCgCGUcACCGCCGugGUGgagcgcucgaagaagUCGGg -3'
miRNA:   3'- cUGGgGUAcUGGUGGUugCACa--------------AGCC- -5'
25962 3' -53.4 NC_005337.1 + 120486 0.66 0.960374
Target:  5'- cGCCCaCGUGuCCGgCGACGcccucaaGUUCGGg -3'
miRNA:   3'- cUGGG-GUACuGGUgGUUGCa------CAAGCC- -5'
25962 3' -53.4 NC_005337.1 + 117265 0.66 0.960374
Target:  5'- cGGCCCgCA-GACC-CCGACGag-UCGGc -3'
miRNA:   3'- -CUGGG-GUaCUGGuGGUUGCacaAGCC- -5'
25962 3' -53.4 NC_005337.1 + 22116 0.66 0.960374
Target:  5'- cACCCCAcGAagCAaCGACGUGUUgGGg -3'
miRNA:   3'- cUGGGGUaCUg-GUgGUUGCACAAgCC- -5'
25962 3' -53.4 NC_005337.1 + 65882 0.66 0.960011
Target:  5'- uGGCCgcggucgCCGUGACCGaggaCGGCGUGcgcugcuccUUCGGg -3'
miRNA:   3'- -CUGG-------GGUACUGGUg---GUUGCAC---------AAGCC- -5'
25962 3' -53.4 NC_005337.1 + 73595 0.66 0.956645
Target:  5'- aACCCC---GCCAUguACGUGUUCcGGu -3'
miRNA:   3'- cUGGGGuacUGGUGguUGCACAAG-CC- -5'
25962 3' -53.4 NC_005337.1 + 11336 0.67 0.952684
Target:  5'- -gUCCCAUGcGCCACCAcCGgGUUCa- -3'
miRNA:   3'- cuGGGGUAC-UGGUGGUuGCaCAAGcc -5'
25962 3' -53.4 NC_005337.1 + 83918 0.67 0.952684
Target:  5'- cGGgCCCGUcuCCGCCGGCGUGggguucUUGGa -3'
miRNA:   3'- -CUgGGGUAcuGGUGGUUGCACa-----AGCC- -5'
25962 3' -53.4 NC_005337.1 + 99535 0.67 0.952684
Target:  5'- cGGCCCgGUGcGCCGCCGAC-UGcUCGc -3'
miRNA:   3'- -CUGGGgUAC-UGGUGGUUGcACaAGCc -5'
25962 3' -53.4 NC_005337.1 + 112579 0.67 0.948486
Target:  5'- --aCCCAUGAacgaggugcCCGCguGCGUG-UCGGa -3'
miRNA:   3'- cugGGGUACU---------GGUGguUGCACaAGCC- -5'
25962 3' -53.4 NC_005337.1 + 52112 0.67 0.939368
Target:  5'- cGACCgggacggaCGUGGCCGCCAcCGUGUgCGc -3'
miRNA:   3'- -CUGGg-------GUACUGGUGGUuGCACAaGCc -5'
25962 3' -53.4 NC_005337.1 + 6581 0.67 0.939368
Target:  5'- aACCCgGUcgcGGCCACCGGCGccaggUCGGc -3'
miRNA:   3'- cUGGGgUA---CUGGUGGUUGCaca--AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.