miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25962 3' -53.4 NC_005337.1 + 2168 0.69 0.864246
Target:  5'- cGGCaCCCAgcGCgACCAGCGUGUccacgacgcgcUCGGu -3'
miRNA:   3'- -CUG-GGGUacUGgUGGUUGCACA-----------AGCC- -5'
25962 3' -53.4 NC_005337.1 + 2268 0.67 0.936443
Target:  5'- cGACCCCGUGuCCGCCcGCacuggGUcaggcugcggcggggUCGGg -3'
miRNA:   3'- -CUGGGGUACuGGUGGuUGca---CA---------------AGCC- -5'
25962 3' -53.4 NC_005337.1 + 2577 0.74 0.605912
Target:  5'- gGACUCCAUGGCgGCCAGCGcgGUUauugcCGGu -3'
miRNA:   3'- -CUGGGGUACUGgUGGUUGCa-CAA-----GCC- -5'
25962 3' -53.4 NC_005337.1 + 5852 0.67 0.934444
Target:  5'- cGACCUCGcUGGCCugCGgcuGCGUGgcgagagCGGc -3'
miRNA:   3'- -CUGGGGU-ACUGGugGU---UGCACaa-----GCC- -5'
25962 3' -53.4 NC_005337.1 + 6581 0.67 0.939368
Target:  5'- aACCCgGUcgcGGCCACCGGCGccaggUCGGc -3'
miRNA:   3'- cUGGGgUA---CUGGUGGUUGCaca--AGCC- -5'
25962 3' -53.4 NC_005337.1 + 8858 0.68 0.911679
Target:  5'- gGACCCugacgccgccgugCAUGACggCACgCAGCGUG-UCGGg -3'
miRNA:   3'- -CUGGG-------------GUACUG--GUG-GUUGCACaAGCC- -5'
25962 3' -53.4 NC_005337.1 + 10272 0.69 0.886228
Target:  5'- aGCUCCcgGACCACCAuccugGCGgaggGgccUCGGa -3'
miRNA:   3'- cUGGGGuaCUGGUGGU-----UGCa---Ca--AGCC- -5'
25962 3' -53.4 NC_005337.1 + 11336 0.67 0.952684
Target:  5'- -gUCCCAUGcGCCACCAcCGgGUUCa- -3'
miRNA:   3'- cuGGGGUAC-UGGUGGUuGCaCAAGcc -5'
25962 3' -53.4 NC_005337.1 + 18852 0.68 0.923856
Target:  5'- cGACUCCcgGACgGCCGGCGagacggcGUccUCGGa -3'
miRNA:   3'- -CUGGGGuaCUGgUGGUUGCa------CA--AGCC- -5'
25962 3' -53.4 NC_005337.1 + 19769 0.66 0.967155
Target:  5'- gGACCCCAUGGaC-CCGACGccgcUGgacUCGGc -3'
miRNA:   3'- -CUGGGGUACUgGuGGUUGC----ACa--AGCC- -5'
25962 3' -53.4 NC_005337.1 + 22116 0.66 0.960374
Target:  5'- cACCCCAcGAagCAaCGACGUGUUgGGg -3'
miRNA:   3'- cUGGGGUaCUg-GUgGUUGCACAAgCC- -5'
25962 3' -53.4 NC_005337.1 + 24900 0.68 0.923856
Target:  5'- aGACCCgcgCGUGcCCGCCucCGUGUacugcaccgccUCGGg -3'
miRNA:   3'- -CUGGG---GUACuGGUGGuuGCACA-----------AGCC- -5'
25962 3' -53.4 NC_005337.1 + 33012 0.74 0.647464
Target:  5'- aACCCCAUgagGACCGCCAGCGgcagGUcaUCGc -3'
miRNA:   3'- cUGGGGUA---CUGGUGGUUGCa---CA--AGCc -5'
25962 3' -53.4 NC_005337.1 + 37069 0.69 0.893099
Target:  5'- uGACCaCgAUGGCCACCAugGcg--CGGu -3'
miRNA:   3'- -CUGG-GgUACUGGUGGUugCacaaGCC- -5'
25962 3' -53.4 NC_005337.1 + 39666 0.74 0.62668
Target:  5'- uGugCggCCAUGGCCGCCAACGUGUa--- -3'
miRNA:   3'- -CugG--GGUACUGGUGGUUGCACAagcc -5'
25962 3' -53.4 NC_005337.1 + 40158 0.7 0.82339
Target:  5'- cGugCUCAUGGUCACCGaccGCGUGUUCa- -3'
miRNA:   3'- -CugGGGUACUGGUGGU---UGCACAAGcc -5'
25962 3' -53.4 NC_005337.1 + 42711 0.69 0.893099
Target:  5'- cGACCCCGagGugUACCGguACGUGgccaCGGc -3'
miRNA:   3'- -CUGGGGUa-CugGUGGU--UGCACaa--GCC- -5'
25962 3' -53.4 NC_005337.1 + 45714 0.74 0.637074
Target:  5'- aACCCCcgGcCCGCCAGCGUGgcgaugaGGa -3'
miRNA:   3'- cUGGGGuaCuGGUGGUUGCACaag----CC- -5'
25962 3' -53.4 NC_005337.1 + 47709 0.66 0.967155
Target:  5'- cGACCCCAcagUGugCugCGGgGgcUUCGGa -3'
miRNA:   3'- -CUGGGGU---ACugGugGUUgCacAAGCC- -5'
25962 3' -53.4 NC_005337.1 + 52112 0.67 0.939368
Target:  5'- cGACCgggacggaCGUGGCCGCCAcCGUGUgCGc -3'
miRNA:   3'- -CUGGg-------GUACUGGUGGUuGCACAaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.