miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25962 5' -56.9 NC_005337.1 + 64314 0.66 0.854569
Target:  5'- gCGUcuUGCGCGUGCccaccacgcggagcgUGGCGccGCGGcGGUa -3'
miRNA:   3'- -GCG--ACGUGCACG---------------ACCGCuaCGUC-UCG- -5'
25962 5' -56.9 NC_005337.1 + 48433 0.66 0.851402
Target:  5'- aCGC-GgACGUGCUGGCGcUGaugaAGCa -3'
miRNA:   3'- -GCGaCgUGCACGACCGCuACguc-UCG- -5'
25962 5' -56.9 NC_005337.1 + 110026 0.66 0.851402
Target:  5'- gGgaGCAUGaUGUUGGCGGgaaCAGGGUc -3'
miRNA:   3'- gCgaCGUGC-ACGACCGCUac-GUCUCG- -5'
25962 5' -56.9 NC_005337.1 + 9626 0.66 0.851402
Target:  5'- gGCUGCGCucgaccucGCagaGcGCGAUGCuGAGCa -3'
miRNA:   3'- gCGACGUGca------CGa--C-CGCUACGuCUCG- -5'
25962 5' -56.9 NC_005337.1 + 70971 0.66 0.84659
Target:  5'- uGCUGCACucgGUGCUGaGCGG-GCucuacaucgagaccGGGCa -3'
miRNA:   3'- gCGACGUG---CACGAC-CGCUaCGu-------------CUCG- -5'
25962 5' -56.9 NC_005337.1 + 82201 0.66 0.843342
Target:  5'- gCGC-GCACG-GCcGGCGGUcgaAGAGCc -3'
miRNA:   3'- -GCGaCGUGCaCGaCCGCUAcg-UCUCG- -5'
25962 5' -56.9 NC_005337.1 + 74702 0.66 0.843342
Target:  5'- uGCUGgcCGCGUgGCUGGCGAaGUAcuGGCc -3'
miRNA:   3'- gCGAC--GUGCA-CGACCGCUaCGUc-UCG- -5'
25962 5' -56.9 NC_005337.1 + 105471 0.66 0.843342
Target:  5'- gGgUGguCGUGCU-GCGgcGCAuGAGCa -3'
miRNA:   3'- gCgACguGCACGAcCGCuaCGU-CUCG- -5'
25962 5' -56.9 NC_005337.1 + 7279 0.66 0.835087
Target:  5'- aGCUGgACGUagucguGCUGGaCGuagcaGUGCAGuGGCg -3'
miRNA:   3'- gCGACgUGCA------CGACC-GC-----UACGUC-UCG- -5'
25962 5' -56.9 NC_005337.1 + 122402 0.66 0.835087
Target:  5'- uGCUGCGCG-GC-GGCGc-GCGGcGCc -3'
miRNA:   3'- gCGACGUGCaCGaCCGCuaCGUCuCG- -5'
25962 5' -56.9 NC_005337.1 + 650 0.66 0.835087
Target:  5'- -cCUGCACG-GCgacGGUGAccuccUGCAGcAGCa -3'
miRNA:   3'- gcGACGUGCaCGa--CCGCU-----ACGUC-UCG- -5'
25962 5' -56.9 NC_005337.1 + 650 0.66 0.835087
Target:  5'- -cCUGCACG-GCgacGGUGAccuccUGCAGcAGCa -3'
miRNA:   3'- gcGACGUGCaCGa--CCGCU-----ACGUC-UCG- -5'
25962 5' -56.9 NC_005337.1 + 79361 0.66 0.835087
Target:  5'- aCGCaUGCACGUccgugaucacGgaGGUGGUGUgguuGAGCu -3'
miRNA:   3'- -GCG-ACGUGCA----------CgaCCGCUACGu---CUCG- -5'
25962 5' -56.9 NC_005337.1 + 28851 0.66 0.830043
Target:  5'- uGCgGCAguacgcCGUGCUGGUGuccaacaagacggacGUGCAGAcguGCa -3'
miRNA:   3'- gCGaCGU------GCACGACCGC---------------UACGUCU---CG- -5'
25962 5' -56.9 NC_005337.1 + 114279 0.66 0.827496
Target:  5'- cCGCaGCACGUGCugcccgaggaccuccUggaggagcucucgcGGCGccgGUGCGGAGCc -3'
miRNA:   3'- -GCGaCGUGCACG---------------A--------------CCGC---UACGUCUCG- -5'
25962 5' -56.9 NC_005337.1 + 59790 0.66 0.826643
Target:  5'- gCGCcgGCACGcgaccacgagGCcgucGGUGGUGguGAGCa -3'
miRNA:   3'- -GCGa-CGUGCa---------CGa---CCGCUACguCUCG- -5'
25962 5' -56.9 NC_005337.1 + 39932 0.66 0.826643
Target:  5'- aGgUGUACGUGCgcGGCGGgcgccucGCGcGGGCg -3'
miRNA:   3'- gCgACGUGCACGa-CCGCUa------CGU-CUCG- -5'
25962 5' -56.9 NC_005337.1 + 48955 0.66 0.826643
Target:  5'- gGUgaUGgACGUGCUGGCcaagGC-GAGCa -3'
miRNA:   3'- gCG--ACgUGCACGACCGcua-CGuCUCG- -5'
25962 5' -56.9 NC_005337.1 + 116325 0.66 0.826643
Target:  5'- aGCgGUGCGUGCUGcuGCGGgcGCAGcGCc -3'
miRNA:   3'- gCGaCGUGCACGAC--CGCUa-CGUCuCG- -5'
25962 5' -56.9 NC_005337.1 + 107157 0.66 0.826643
Target:  5'- uGCUGCGCGUggccaagcggcuGCUGGaGAUGCc--GCu -3'
miRNA:   3'- gCGACGUGCA------------CGACCgCUACGucuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.