miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25963 3' -55.9 NC_005337.1 + 31448 0.66 0.896427
Target:  5'- gUCGGacuUGCGGaa-CUUGCCGCUGaGCa -3'
miRNA:   3'- gAGCU---AUGCCguaGAGCGGCGACgUG- -5'
25963 3' -55.9 NC_005337.1 + 132565 0.66 0.896427
Target:  5'- gUCGGcACGGUggccGUgUCGCUGUUGCGa -3'
miRNA:   3'- gAGCUaUGCCG----UAgAGCGGCGACGUg -5'
25963 3' -55.9 NC_005337.1 + 104905 0.66 0.896427
Target:  5'- gCUCGAaGCuGaGCcUCUCGCCGgUGCuCa -3'
miRNA:   3'- -GAGCUaUG-C-CGuAGAGCGGCgACGuG- -5'
25963 3' -55.9 NC_005337.1 + 124302 0.66 0.896427
Target:  5'- -cCGAggacGCGGCcUC-CGUCGCgGCGCa -3'
miRNA:   3'- gaGCUa---UGCCGuAGaGCGGCGaCGUG- -5'
25963 3' -55.9 NC_005337.1 + 68926 0.66 0.895098
Target:  5'- -gCGuGUGCGGCAUCgacccguacccgCGCgGCgGCACc -3'
miRNA:   3'- gaGC-UAUGCCGUAGa-----------GCGgCGaCGUG- -5'
25963 3' -55.9 NC_005337.1 + 17110 0.66 0.889687
Target:  5'- -gCGAgugcgccCGGCAgaaCUCGCCGCcgucgUGCAUg -3'
miRNA:   3'- gaGCUau-----GCCGUa--GAGCGGCG-----ACGUG- -5'
25963 3' -55.9 NC_005337.1 + 12556 0.66 0.889687
Target:  5'- -aCGugcaGCGGCGUCUUGuCCGCcuccccGCGCg -3'
miRNA:   3'- gaGCua--UGCCGUAGAGC-GGCGa-----CGUG- -5'
25963 3' -55.9 NC_005337.1 + 111199 0.66 0.889687
Target:  5'- -aCGAUGCcgGGCAcggC-CGCCGCguuccgGCGCg -3'
miRNA:   3'- gaGCUAUG--CCGUa--GaGCGGCGa-----CGUG- -5'
25963 3' -55.9 NC_005337.1 + 65517 0.66 0.889687
Target:  5'- aCUCGAUGCGGUG-Cg-GCCGgUGCu- -3'
miRNA:   3'- -GAGCUAUGCCGUaGagCGGCgACGug -5'
25963 3' -55.9 NC_005337.1 + 39357 0.66 0.889687
Target:  5'- ---aGUGCGGCAUCcucuUCGUCGCcaccgugGCGCa -3'
miRNA:   3'- gagcUAUGCCGUAG----AGCGGCGa------CGUG- -5'
25963 3' -55.9 NC_005337.1 + 75006 0.66 0.889687
Target:  5'- -aCGAgGCGGC----CGCCGCUGaCGCg -3'
miRNA:   3'- gaGCUaUGCCGuagaGCGGCGAC-GUG- -5'
25963 3' -55.9 NC_005337.1 + 16038 0.66 0.882715
Target:  5'- -gCGcUGCGGCGcCU-GCCGCcGCGCg -3'
miRNA:   3'- gaGCuAUGCCGUaGAgCGGCGaCGUG- -5'
25963 3' -55.9 NC_005337.1 + 113119 0.66 0.882715
Target:  5'- -aCGA-ACGGCGUCgagcaggacgCGCUGCgGUACg -3'
miRNA:   3'- gaGCUaUGCCGUAGa---------GCGGCGaCGUG- -5'
25963 3' -55.9 NC_005337.1 + 25354 0.66 0.882715
Target:  5'- gUCGcgGC-GCGUCUCGCUGgUGCc- -3'
miRNA:   3'- gAGCuaUGcCGUAGAGCGGCgACGug -5'
25963 3' -55.9 NC_005337.1 + 110335 0.66 0.882715
Target:  5'- -cCGGccggGCGGCGUCgcgcgcgccUGCCGCggGCGCg -3'
miRNA:   3'- gaGCUa---UGCCGUAGa--------GCGGCGa-CGUG- -5'
25963 3' -55.9 NC_005337.1 + 29767 0.66 0.882715
Target:  5'- cCUCGA-ACGacuCAcugucuggacUgUCGCCGCUGCGCg -3'
miRNA:   3'- -GAGCUaUGCc--GU----------AgAGCGGCGACGUG- -5'
25963 3' -55.9 NC_005337.1 + 130670 0.66 0.875515
Target:  5'- -aCGucUACGGCG-CUaCGCCGCUggggGCGCu -3'
miRNA:   3'- gaGCu-AUGCCGUaGA-GCGGCGA----CGUG- -5'
25963 3' -55.9 NC_005337.1 + 11628 0.66 0.875515
Target:  5'- gCUCGAcgagucgcgucuUGCGGCGgugCUCGCgGaacagGCGCu -3'
miRNA:   3'- -GAGCU------------AUGCCGUa--GAGCGgCga---CGUG- -5'
25963 3' -55.9 NC_005337.1 + 107062 0.66 0.875515
Target:  5'- cCUgGcgGCGGCGgcgCgccagggggUGCCGCUGUGCg -3'
miRNA:   3'- -GAgCuaUGCCGUa--Ga--------GCGGCGACGUG- -5'
25963 3' -55.9 NC_005337.1 + 32083 0.66 0.875515
Target:  5'- -gUGAUGCGcaGCGUCUCcaGCaCGUUGUACa -3'
miRNA:   3'- gaGCUAUGC--CGUAGAG--CG-GCGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.