miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25963 5' -55.3 NC_005337.1 + 30392 0.66 0.927245
Target:  5'- aGGUGaggauguCGAgGCCGCCGCgCUccGCGAa -3'
miRNA:   3'- cCCAUguu----GUUgUGGCGGCG-GA--CGCU- -5'
25963 5' -55.3 NC_005337.1 + 579 0.66 0.927245
Target:  5'- ---cGCGGCcGCGCggaaGCCGCCgGCGAa -3'
miRNA:   3'- cccaUGUUGuUGUGg---CGGCGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 6225 0.66 0.927245
Target:  5'- uGGUGCAGCAGCGuguCC-CCGC--GCGAg -3'
miRNA:   3'- cCCAUGUUGUUGU---GGcGGCGgaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 21522 0.66 0.927245
Target:  5'- --uUGCAGCAGCgACCGCgCGCg-GCGGc -3'
miRNA:   3'- cccAUGUUGUUG-UGGCG-GCGgaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 76068 0.66 0.927245
Target:  5'- ---cGCGGCGguACGCCGCgGUCUGCu- -3'
miRNA:   3'- cccaUGUUGU--UGUGGCGgCGGACGcu -5'
25963 5' -55.3 NC_005337.1 + 53856 0.66 0.927245
Target:  5'- cGGGcacgacCAGCGACGCCaCCGCgaGCa- -3'
miRNA:   3'- -CCCau----GUUGUUGUGGcGGCGgaCGcu -5'
25963 5' -55.3 NC_005337.1 + 4419 0.66 0.927245
Target:  5'- aGGGUugAGCAcguucACGCCGaCaccaGCCUcuaugaacggGCGAa -3'
miRNA:   3'- -CCCAugUUGU-----UGUGGC-Gg---CGGA----------CGCU- -5'
25963 5' -55.3 NC_005337.1 + 50192 0.66 0.927245
Target:  5'- cGGccGCAACccucuGGCuCCGCCGCcCUGCGc -3'
miRNA:   3'- -CCcaUGUUG-----UUGuGGCGGCG-GACGCu -5'
25963 5' -55.3 NC_005337.1 + 90192 0.66 0.927245
Target:  5'- cGGGgaagaagucGCAuccguuuguCAGCGCCGCCaGCUUGCa- -3'
miRNA:   3'- -CCCa--------UGUu--------GUUGUGGCGG-CGGACGcu -5'
25963 5' -55.3 NC_005337.1 + 29129 0.66 0.927245
Target:  5'- aGGUGCGGCGAUGCCGCgGaucguaUGCu- -3'
miRNA:   3'- cCCAUGUUGUUGUGGCGgCgg----ACGcu -5'
25963 5' -55.3 NC_005337.1 + 34406 0.66 0.927245
Target:  5'- cGGUGCucCAggGCAggcCCGaCCGCCUGgCGGg -3'
miRNA:   3'- cCCAUGuuGU--UGU---GGC-GGCGGAC-GCU- -5'
25963 5' -55.3 NC_005337.1 + 132571 0.66 0.927245
Target:  5'- cGGUACGGC-GCcUCGCC-CCUGCa- -3'
miRNA:   3'- cCCAUGUUGuUGuGGCGGcGGACGcu -5'
25963 5' -55.3 NC_005337.1 + 15244 0.66 0.927245
Target:  5'- cGGUccuGGCGGCGCCGgCGCCgaacguugugGCGAc -3'
miRNA:   3'- cCCAug-UUGUUGUGGCgGCGGa---------CGCU- -5'
25963 5' -55.3 NC_005337.1 + 49374 0.66 0.927245
Target:  5'- aGGcgGCGACcgccGCACCGCCcCCcGCGGc -3'
miRNA:   3'- cCCa-UGUUGu---UGUGGCGGcGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 579 0.66 0.927245
Target:  5'- ---cGCGGCcGCGCggaaGCCGCCgGCGAa -3'
miRNA:   3'- cccaUGUUGuUGUGg---CGGCGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 97722 0.66 0.925629
Target:  5'- gGGGUGgcuCGcCGGCGCCGCCcagccgccggggacGCCcGCGGc -3'
miRNA:   3'- -CCCAU---GUuGUUGUGGCGG--------------CGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 111512 0.66 0.923991
Target:  5'- -uGUACAGCcGCAuaccgagcccgcgcuCCGCCGCgUGCa- -3'
miRNA:   3'- ccCAUGUUGuUGU---------------GGCGGCGgACGcu -5'
25963 5' -55.3 NC_005337.1 + 47469 0.66 0.923991
Target:  5'- cGGGUcCGugucgcugccgucgcGgGACcuGCCGCCGCCcgUGCGGa -3'
miRNA:   3'- -CCCAuGU---------------UgUUG--UGGCGGCGG--ACGCU- -5'
25963 5' -55.3 NC_005337.1 + 2449 0.66 0.921774
Target:  5'- aGGUACGuguGCAGCGCCGUguUGCCgaaGCc- -3'
miRNA:   3'- cCCAUGU---UGUUGUGGCG--GCGGa--CGcu -5'
25963 5' -55.3 NC_005337.1 + 24540 0.66 0.921774
Target:  5'- -cGUGCuGC-GCACCGCCGaCUGCu- -3'
miRNA:   3'- ccCAUGuUGuUGUGGCGGCgGACGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.