miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25963 5' -55.3 NC_005337.1 + 62007 0.66 0.910105
Target:  5'- -uGUACAGCAGcCGCCGCuCGUC-GUGGg -3'
miRNA:   3'- ccCAUGUUGUU-GUGGCG-GCGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 98998 0.66 0.903909
Target:  5'- aGGUGgAGCcGCcccccgagguGCgCGCgGCCUGCGAg -3'
miRNA:   3'- cCCAUgUUGuUG----------UG-GCGgCGGACGCU- -5'
25963 5' -55.3 NC_005337.1 + 29212 0.66 0.910105
Target:  5'- aGGcGCugcGCAGCGCCGCgcggccgggcguCGCCUGCc- -3'
miRNA:   3'- cCCaUGu--UGUUGUGGCG------------GCGGACGcu -5'
25963 5' -55.3 NC_005337.1 + 123055 0.66 0.903909
Target:  5'- aGGUGCAccugcgguACGGCAUgaGCCGCgUGCa- -3'
miRNA:   3'- cCCAUGU--------UGUUGUGg-CGGCGgACGcu -5'
25963 5' -55.3 NC_005337.1 + 132571 0.66 0.927245
Target:  5'- cGGUACGGC-GCcUCGCC-CCUGCa- -3'
miRNA:   3'- cCCAUGUUGuUGuGGCGGcGGACGcu -5'
25963 5' -55.3 NC_005337.1 + 40751 0.66 0.903909
Target:  5'- uGGGUGC-ACG--GCCGUCGCCaGUGu -3'
miRNA:   3'- -CCCAUGuUGUugUGGCGGCGGaCGCu -5'
25963 5' -55.3 NC_005337.1 + 71856 0.66 0.897476
Target:  5'- aGGUGCccGGCAuccUGCCGCaccaGCUUGCGAc -3'
miRNA:   3'- cCCAUG--UUGUu--GUGGCGg---CGGACGCU- -5'
25963 5' -55.3 NC_005337.1 + 16679 0.66 0.902004
Target:  5'- aGGGUcgACAGCAucucgcgcacggcgGCcuCCGCUGCCggGUGAc -3'
miRNA:   3'- -CCCA--UGUUGU--------------UGu-GGCGGCGGa-CGCU- -5'
25963 5' -55.3 NC_005337.1 + 27152 0.66 0.903909
Target:  5'- cGGacACAGCGuCACCGCCGCgU-CGAa -3'
miRNA:   3'- cCCa-UGUUGUuGUGGCGGCGgAcGCU- -5'
25963 5' -55.3 NC_005337.1 + 103513 0.66 0.896819
Target:  5'- -cGUGCAGCGcuuccgcACGCUGCCGCC--CGAg -3'
miRNA:   3'- ccCAUGUUGU-------UGUGGCGGCGGacGCU- -5'
25963 5' -55.3 NC_005337.1 + 118760 0.66 0.8955
Target:  5'- cGGGUGCGugacaugcuugcugGCGACGCUGuCCGCagcaGCGc -3'
miRNA:   3'- -CCCAUGU--------------UGUUGUGGC-GGCGga--CGCu -5'
25963 5' -55.3 NC_005337.1 + 36129 0.66 0.897476
Target:  5'- cGGGgaagGCcGCcacgGAC-CCGCCGCC-GCGGu -3'
miRNA:   3'- -CCCa---UGuUG----UUGuGGCGGCGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 20081 0.66 0.897476
Target:  5'- aGGUGCuugggGugGAUGCCGuCCGCCaucaGCGAg -3'
miRNA:   3'- cCCAUG-----UugUUGUGGC-GGCGGa---CGCU- -5'
25963 5' -55.3 NC_005337.1 + 68464 0.66 0.903909
Target:  5'- aGG-ACGGCAccuucgACGCCGCCGCaccggGCGc -3'
miRNA:   3'- cCCaUGUUGU------UGUGGCGGCGga---CGCu -5'
25963 5' -55.3 NC_005337.1 + 133507 0.66 0.897476
Target:  5'- cGGcGcGCAgcACAugGCCGCCGUCgaggccGCGGg -3'
miRNA:   3'- -CC-CaUGU--UGUugUGGCGGCGGa-----CGCU- -5'
25963 5' -55.3 NC_005337.1 + 121197 0.66 0.896819
Target:  5'- cGGUaacgccuACAAgUAACGCCGuaaccaCCGUCUGCGAa -3'
miRNA:   3'- cCCA-------UGUU-GUUGUGGC------GGCGGACGCU- -5'
25963 5' -55.3 NC_005337.1 + 98958 0.66 0.903909
Target:  5'- uGGGU-CcGCGGCGCCGucuucgacuCCGCgaGCGGg -3'
miRNA:   3'- -CCCAuGuUGUUGUGGC---------GGCGgaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 38700 0.66 0.897476
Target:  5'- nGGUgucgGCGGCGGC-CCGUCGuCCUGaCGGg -3'
miRNA:   3'- cCCA----UGUUGUUGuGGCGGC-GGAC-GCU- -5'
25963 5' -55.3 NC_005337.1 + 51688 0.66 0.910105
Target:  5'- --cUACGGCGAgGCCaGUCugGCCUGCGAc -3'
miRNA:   3'- cccAUGUUGUUgUGG-CGG--CGGACGCU- -5'
25963 5' -55.3 NC_005337.1 + 95079 0.66 0.903909
Target:  5'- cGGGUccgcguagcccGCGGCGACgGCCuuGCCGCagucgGCGAu -3'
miRNA:   3'- -CCCA-----------UGUUGUUG-UGG--CGGCGga---CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.