miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25963 5' -55.3 NC_005337.1 + 99403 0.66 0.921774
Target:  5'- cGGUGCuGC-GCACCGCgGgCgGCGGg -3'
miRNA:   3'- cCCAUGuUGuUGUGGCGgCgGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 66647 0.66 0.921774
Target:  5'- gGGaGUGguGCGGCGCCGacuuacugccuaCCGCUUGCuGAa -3'
miRNA:   3'- -CC-CAUguUGUUGUGGC------------GGCGGACG-CU- -5'
25963 5' -55.3 NC_005337.1 + 82296 0.66 0.921774
Target:  5'- uGGUGCcc---CGCCGCCGCCaGCu- -3'
miRNA:   3'- cCCAUGuuguuGUGGCGGCGGaCGcu -5'
25963 5' -55.3 NC_005337.1 + 115056 0.66 0.921774
Target:  5'- cGG-ACGugGACGCCGUcacggacgaCGUCUGCGu -3'
miRNA:   3'- cCCaUGUugUUGUGGCG---------GCGGACGCu -5'
25963 5' -55.3 NC_005337.1 + 2449 0.66 0.921774
Target:  5'- aGGUACGuguGCAGCGCCGUguUGCCgaaGCc- -3'
miRNA:   3'- cCCAUGU---UGUUGUGGCG--GCGGa--CGcu -5'
25963 5' -55.3 NC_005337.1 + 37367 0.66 0.920085
Target:  5'- gGGGUACAGCGAgggcagcguguucuCGCCGacguccaCGCC-GCGc -3'
miRNA:   3'- -CCCAUGUUGUU--------------GUGGCg------GCGGaCGCu -5'
25963 5' -55.3 NC_005337.1 + 9340 0.66 0.91606
Target:  5'- cGGGacaUGCGAUGACG-CGUCGCCUG-GAc -3'
miRNA:   3'- -CCC---AUGUUGUUGUgGCGGCGGACgCU- -5'
25963 5' -55.3 NC_005337.1 + 37197 0.66 0.91606
Target:  5'- cGGUugGGCAcgcagacCACCGCgCGCCgcgcgugcgugGCGAu -3'
miRNA:   3'- cCCAugUUGUu------GUGGCG-GCGGa----------CGCU- -5'
25963 5' -55.3 NC_005337.1 + 71502 0.66 0.91606
Target:  5'- cGGUGCccGACuucgcguucCACCGCCGCgUcGCGGa -3'
miRNA:   3'- cCCAUG--UUGuu-------GUGGCGGCGgA-CGCU- -5'
25963 5' -55.3 NC_005337.1 + 50365 0.66 0.91606
Target:  5'- uGGgcCAGCAgGCGCCGCCcCCguacccgGCGGa -3'
miRNA:   3'- cCCauGUUGU-UGUGGCGGcGGa------CGCU- -5'
25963 5' -55.3 NC_005337.1 + 66060 0.66 0.91606
Target:  5'- gGGGaGCGACcgcaucgcgGACGCgGCCGCg-GCGGc -3'
miRNA:   3'- -CCCaUGUUG---------UUGUGgCGGCGgaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 93371 0.66 0.91606
Target:  5'- uGGGgGCAAguGCcugACCuGCUGCCUGUGc -3'
miRNA:   3'- -CCCaUGUUguUG---UGG-CGGCGGACGCu -5'
25963 5' -55.3 NC_005337.1 + 6420 0.66 0.91606
Target:  5'- -uGUGCAcgcACAGCAgCGCgGCCUcCGAg -3'
miRNA:   3'- ccCAUGU---UGUUGUgGCGgCGGAcGCU- -5'
25963 5' -55.3 NC_005337.1 + 131875 0.66 0.91606
Target:  5'- -cGUGCGAC--CGCUuCCGCCUGCGc -3'
miRNA:   3'- ccCAUGUUGuuGUGGcGGCGGACGCu -5'
25963 5' -55.3 NC_005337.1 + 77169 0.66 0.910105
Target:  5'- uGGUACAGCuuccggaagaucAGCGUCGCCGUCUcGCGc -3'
miRNA:   3'- cCCAUGUUG------------UUGUGGCGGCGGA-CGCu -5'
25963 5' -55.3 NC_005337.1 + 99639 0.66 0.910105
Target:  5'- cGGG-ACAcggacgugcGCGGCAUCGCCGC--GCGGc -3'
miRNA:   3'- -CCCaUGU---------UGUUGUGGCGGCGgaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 62007 0.66 0.910105
Target:  5'- -uGUACAGCAGcCGCCGCuCGUC-GUGGg -3'
miRNA:   3'- ccCAUGUUGUU-GUGGCG-GCGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 51688 0.66 0.910105
Target:  5'- --cUACGGCGAgGCCaGUCugGCCUGCGAc -3'
miRNA:   3'- cccAUGUUGUUgUGG-CGG--CGGACGCU- -5'
25963 5' -55.3 NC_005337.1 + 29212 0.66 0.910105
Target:  5'- aGGcGCugcGCAGCGCCGCgcggccgggcguCGCCUGCc- -3'
miRNA:   3'- cCCaUGu--UGUUGUGGCG------------GCGGACGcu -5'
25963 5' -55.3 NC_005337.1 + 122396 0.66 0.910105
Target:  5'- aGGUcgugcugcGCGGCGGCGCgCGgCGCCUGUc- -3'
miRNA:   3'- cCCA--------UGUUGUUGUG-GCgGCGGACGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.