miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25963 5' -55.3 NC_005337.1 + 579 0.66 0.927245
Target:  5'- ---cGCGGCcGCGCggaaGCCGCCgGCGAa -3'
miRNA:   3'- cccaUGUUGuUGUGg---CGGCGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 579 0.66 0.927245
Target:  5'- ---cGCGGCcGCGCggaaGCCGCCgGCGAa -3'
miRNA:   3'- cccaUGUUGuUGUGg---CGGCGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 732 0.7 0.707318
Target:  5'- gGGGUACGcgggcgagagcGCGGCGcCCGCgGCCU-CGAc -3'
miRNA:   3'- -CCCAUGU-----------UGUUGU-GGCGgCGGAcGCU- -5'
25963 5' -55.3 NC_005337.1 + 732 0.7 0.707318
Target:  5'- gGGGUACGcgggcgagagcGCGGCGcCCGCgGCCU-CGAc -3'
miRNA:   3'- -CCCAUGU-----------UGUUGU-GGCGgCGGAcGCU- -5'
25963 5' -55.3 NC_005337.1 + 1092 0.78 0.307686
Target:  5'- cGGGcUACAgccggcGCAGCGCCGCCGCC-GgGAg -3'
miRNA:   3'- -CCC-AUGU------UGUUGUGGCGGCGGaCgCU- -5'
25963 5' -55.3 NC_005337.1 + 1092 0.78 0.307686
Target:  5'- cGGGcUACAgccggcGCAGCGCCGCCGCC-GgGAg -3'
miRNA:   3'- -CCC-AUGU------UGUUGUGGCGGCGGaCgCU- -5'
25963 5' -55.3 NC_005337.1 + 1321 0.67 0.883908
Target:  5'- aGGUGCAcgugcACGAgGCCGCgGCg-GCGGu -3'
miRNA:   3'- cCCAUGU-----UGUUgUGGCGgCGgaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 1637 0.68 0.833775
Target:  5'- aGGUcgaugcgcgcgcccGCGGCGACgagcuugGCCGCCGCCgcgucguUGCGGu -3'
miRNA:   3'- cCCA--------------UGUUGUUG-------UGGCGGCGG-------ACGCU- -5'
25963 5' -55.3 NC_005337.1 + 2449 0.66 0.921774
Target:  5'- aGGUACGuguGCAGCGCCGUguUGCCgaaGCc- -3'
miRNA:   3'- cCCAUGU---UGUUGUGGCG--GCGGa--CGcu -5'
25963 5' -55.3 NC_005337.1 + 2494 0.68 0.812292
Target:  5'- cGGGUACGcgcGCAGCAgCGU-GUgUGCGAa -3'
miRNA:   3'- -CCCAUGU---UGUUGUgGCGgCGgACGCU- -5'
25963 5' -55.3 NC_005337.1 + 2768 0.67 0.866434
Target:  5'- aGGUACAGCAGCGCgaucugcaggaacaCGaacuugaggaacuCCGCgUGCGAg -3'
miRNA:   3'- cCCAUGUUGUUGUG--------------GC-------------GGCGgACGCU- -5'
25963 5' -55.3 NC_005337.1 + 4419 0.66 0.927245
Target:  5'- aGGGUugAGCAcguucACGCCGaCaccaGCCUcuaugaacggGCGAa -3'
miRNA:   3'- -CCCAugUUGU-----UGUGGC-Gg---CGGA----------CGCU- -5'
25963 5' -55.3 NC_005337.1 + 4584 0.67 0.861869
Target:  5'- cGGGcGCGGCGACugCGCgUGCUggUGCa- -3'
miRNA:   3'- -CCCaUGUUGUUGugGCG-GCGG--ACGcu -5'
25963 5' -55.3 NC_005337.1 + 5402 0.67 0.854093
Target:  5'- uGGGUgcGCAGCAGCugCGCaguucgGCC-GUGGu -3'
miRNA:   3'- -CCCA--UGUUGUUGugGCGg-----CGGaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 5473 0.69 0.78885
Target:  5'- uGGUGCGGCAccgcucgguGCGCaCGCCcguggacccgaauccGCCUGCGc -3'
miRNA:   3'- cCCAUGUUGU---------UGUG-GCGG---------------CGGACGCu -5'
25963 5' -55.3 NC_005337.1 + 5842 0.66 0.903909
Target:  5'- -aGUGCGgccGCGACcUCGCUgGCCUGCGGc -3'
miRNA:   3'- ccCAUGU---UGUUGuGGCGG-CGGACGCU- -5'
25963 5' -55.3 NC_005337.1 + 6225 0.66 0.927245
Target:  5'- uGGUGCAGCAGCGuguCC-CCGC--GCGAg -3'
miRNA:   3'- cCCAUGUUGUUGU---GGcGGCGgaCGCU- -5'
25963 5' -55.3 NC_005337.1 + 6420 0.66 0.91606
Target:  5'- -uGUGCAcgcACAGCAgCGCgGCCUcCGAg -3'
miRNA:   3'- ccCAUGU---UGUUGUgGCGgCGGAcGCU- -5'
25963 5' -55.3 NC_005337.1 + 7232 0.67 0.869434
Target:  5'- cGGUGC-GCAccuccGCGcCCGCCGCCaGCa- -3'
miRNA:   3'- cCCAUGuUGU-----UGU-GGCGGCGGaCGcu -5'
25963 5' -55.3 NC_005337.1 + 7844 0.69 0.794351
Target:  5'- uGGUACAcgcGCAcgcGCGCCGUCGCgCgccggGCGGc -3'
miRNA:   3'- cCCAUGU---UGU---UGUGGCGGCG-Ga----CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.