miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25964 5' -57.3 NC_005337.1 + 66623 0.66 0.842356
Target:  5'- aCUCGguGGUgcuGGAgcaCGCGCGcGACCa -3'
miRNA:   3'- -GAGCguCCA---CCUgaaGCGCGU-CUGGa -5'
25964 5' -57.3 NC_005337.1 + 50693 0.66 0.841543
Target:  5'- uUCGUuGGUGGACgcggacccccuguUUUGCGCGGgacuGCCg -3'
miRNA:   3'- gAGCGuCCACCUG-------------AAGCGCGUC----UGGa -5'
25964 5' -57.3 NC_005337.1 + 60206 0.66 0.834143
Target:  5'- -gCGCGGGgggGGACggcuugggCGCGgGGGCUg -3'
miRNA:   3'- gaGCGUCCa--CCUGaa------GCGCgUCUGGa -5'
25964 5' -57.3 NC_005337.1 + 102387 0.66 0.825745
Target:  5'- -gCGCuGGUGGAgagCGCGaAGACCg -3'
miRNA:   3'- gaGCGuCCACCUgaaGCGCgUCUGGa -5'
25964 5' -57.3 NC_005337.1 + 25275 0.66 0.81717
Target:  5'- -aCGCGGcGcUGGAgUUCGCGCgcacggcgggcGGGCCg -3'
miRNA:   3'- gaGCGUC-C-ACCUgAAGCGCG-----------UCUGGa -5'
25964 5' -57.3 NC_005337.1 + 96941 0.66 0.815435
Target:  5'- aUCGU-GGUGGACgaggugcucgcCGCGCGcGACCa -3'
miRNA:   3'- gAGCGuCCACCUGaa---------GCGCGU-CUGGa -5'
25964 5' -57.3 NC_005337.1 + 18800 0.66 0.807543
Target:  5'- cCUCGUGGuUGGGCUUCagGCGCAugucuccGGCCg -3'
miRNA:   3'- -GAGCGUCcACCUGAAG--CGCGU-------CUGGa -5'
25964 5' -57.3 NC_005337.1 + 105494 0.67 0.799522
Target:  5'- cCUCGCAGcaGGuCUUgGCGguGGCUa -3'
miRNA:   3'- -GAGCGUCcaCCuGAAgCGCguCUGGa -5'
25964 5' -57.3 NC_005337.1 + 9698 0.67 0.790467
Target:  5'- -cCGCAGGguagcgcuUGGACgcggccUCGCGCAGcggggaggagaGCCUg -3'
miRNA:   3'- gaGCGUCC--------ACCUGa-----AGCGCGUC-----------UGGA- -5'
25964 5' -57.3 NC_005337.1 + 91073 0.67 0.790467
Target:  5'- uUCGCGaa-GGACggCGCGguGACCg -3'
miRNA:   3'- gAGCGUccaCCUGaaGCGCguCUGGa -5'
25964 5' -57.3 NC_005337.1 + 132796 0.67 0.790467
Target:  5'- aUCG-AGGUGGGg--CGCGCGGACg- -3'
miRNA:   3'- gAGCgUCCACCUgaaGCGCGUCUGga -5'
25964 5' -57.3 NC_005337.1 + 33707 0.67 0.789553
Target:  5'- cCUCGaAGGUGGuggcgccgaggauGCggUCGCGCAGcACCc -3'
miRNA:   3'- -GAGCgUCCACC-------------UGa-AGCGCGUC-UGGa -5'
25964 5' -57.3 NC_005337.1 + 69539 0.67 0.781267
Target:  5'- aUCGCAGG-GaACcggCGCGCGGGCUg -3'
miRNA:   3'- gAGCGUCCaCcUGaa-GCGCGUCUGGa -5'
25964 5' -57.3 NC_005337.1 + 36155 0.67 0.771934
Target:  5'- -cCGCGgugccuggucacGGUGGACcggcccacgUCGuCGCAGACCa -3'
miRNA:   3'- gaGCGU------------CCACCUGa--------AGC-GCGUCUGGa -5'
25964 5' -57.3 NC_005337.1 + 77668 0.67 0.771934
Target:  5'- uCUCGCAGacgauguccGUGGACUgcgagCGCGCc-ACCa -3'
miRNA:   3'- -GAGCGUC---------CACCUGAa----GCGCGucUGGa -5'
25964 5' -57.3 NC_005337.1 + 61435 0.67 0.762475
Target:  5'- -cCGUAGGUGGAgUUCGagaaGUAGAUg- -3'
miRNA:   3'- gaGCGUCCACCUgAAGCg---CGUCUGga -5'
25964 5' -57.3 NC_005337.1 + 6041 0.67 0.762475
Target:  5'- gUCGCGGGcgUGGAUgucCGCGCccgcGGCCa -3'
miRNA:   3'- gAGCGUCC--ACCUGaa-GCGCGu---CUGGa -5'
25964 5' -57.3 NC_005337.1 + 76837 0.67 0.7529
Target:  5'- gCUCGC-GGUGGcCggagCGCGUAGuCCa -3'
miRNA:   3'- -GAGCGuCCACCuGaa--GCGCGUCuGGa -5'
25964 5' -57.3 NC_005337.1 + 116024 0.67 0.7529
Target:  5'- --aGCAGGUGGACgugaccguccUCGCGCGG-Ca- -3'
miRNA:   3'- gagCGUCCACCUGa---------AGCGCGUCuGga -5'
25964 5' -57.3 NC_005337.1 + 53731 0.68 0.733439
Target:  5'- aUCGCccucugccGGGUGGACaucucCGCGCcccGGGCCUc -3'
miRNA:   3'- gAGCG--------UCCACCUGaa---GCGCG---UCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.