miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25965 3' -55.1 NC_005337.1 + 17515 0.66 0.922953
Target:  5'- uUGUUCcGGCGCaGGUGCuccuucaUCAGCCGc -3'
miRNA:   3'- uACAGGuUCGCGcCCAUGc------AGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 77763 0.66 0.922953
Target:  5'- -cGUCUuGGCGCGGucgcggACGUgGGCCa -3'
miRNA:   3'- uaCAGGuUCGCGCCca----UGCAgUUGGc -5'
25965 3' -55.1 NC_005337.1 + 132048 0.66 0.922953
Target:  5'- -gGUCCucuacGGCGCGguGGUGCaUCGGCCc -3'
miRNA:   3'- uaCAGGu----UCGCGC--CCAUGcAGUUGGc -5'
25965 3' -55.1 NC_005337.1 + 11807 0.66 0.922953
Target:  5'- cGUGgCCAGGUGCcGGUugGUCGAgUa -3'
miRNA:   3'- -UACaGGUUCGCGcCCAugCAGUUgGc -5'
25965 3' -55.1 NC_005337.1 + 80430 0.66 0.922953
Target:  5'- -cGUCCGcGGCGCGca-GCGcCAGCCGg -3'
miRNA:   3'- uaCAGGU-UCGCGCccaUGCaGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 101445 0.66 0.917245
Target:  5'- gGUGcgcUCCAccgaggaggGGCGCGaGUGCGUgGACCa -3'
miRNA:   3'- -UAC---AGGU---------UCGCGCcCAUGCAgUUGGc -5'
25965 3' -55.1 NC_005337.1 + 71585 0.66 0.917245
Target:  5'- cUGUCCAAGC-UGGGcUACGU--GCUGg -3'
miRNA:   3'- uACAGGUUCGcGCCC-AUGCAguUGGC- -5'
25965 3' -55.1 NC_005337.1 + 6135 0.66 0.917245
Target:  5'- -cGUCCGAGCGCGuuUcgcgcguucacGCGgCAGCCGc -3'
miRNA:   3'- uaCAGGUUCGCGCccA-----------UGCaGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 18344 0.66 0.917245
Target:  5'- -gGUCCGAGCaCGGGccCGU-GGCCGa -3'
miRNA:   3'- uaCAGGUUCGcGCCCauGCAgUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 65764 0.66 0.911291
Target:  5'- -aG-CCGAGCGCGGGcGCacccaCGGCCGc -3'
miRNA:   3'- uaCaGGUUCGCGCCCaUGca---GUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 58249 0.66 0.905093
Target:  5'- -aGUCC-GGCGCGGcGgucuuccGCGUguACCGg -3'
miRNA:   3'- uaCAGGuUCGCGCC-Ca------UGCAguUGGC- -5'
25965 3' -55.1 NC_005337.1 + 80573 0.66 0.905093
Target:  5'- cGUGUCCAGcauGCGCGGcaGCuUCAGCgCGg -3'
miRNA:   3'- -UACAGGUU---CGCGCCcaUGcAGUUG-GC- -5'
25965 3' -55.1 NC_005337.1 + 93271 0.66 0.905093
Target:  5'- gGUGgCgAGGcCGgGGGUGCGUCGGCg- -3'
miRNA:   3'- -UACaGgUUC-GCgCCCAUGCAGUUGgc -5'
25965 3' -55.1 NC_005337.1 + 29766 0.66 0.898653
Target:  5'- -cGUCCAaccgGGCGUccGGGUGCG-CGAgCGc -3'
miRNA:   3'- uaCAGGU----UCGCG--CCCAUGCaGUUgGC- -5'
25965 3' -55.1 NC_005337.1 + 49573 0.66 0.898653
Target:  5'- uUGUCC-AGCGcCGGGUcCGUgggaucggCGACCa -3'
miRNA:   3'- uACAGGuUCGC-GCCCAuGCA--------GUUGGc -5'
25965 3' -55.1 NC_005337.1 + 8213 0.66 0.898653
Target:  5'- -cGUCCAGGuCGgcaaGGGUcGCGUCcgcACCGg -3'
miRNA:   3'- uaCAGGUUC-GCg---CCCA-UGCAGu--UGGC- -5'
25965 3' -55.1 NC_005337.1 + 25287 0.66 0.897996
Target:  5'- -aGUUCGcgcgcacGGCggGCGGGccgcGCGUCGACCGg -3'
miRNA:   3'- uaCAGGU-------UCG--CGCCCa---UGCAGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 1431 0.66 0.891974
Target:  5'- -gGUCUgcGAGCGCGgcggcgccgaGGUGCG-CGACCa -3'
miRNA:   3'- uaCAGG--UUCGCGC----------CCAUGCaGUUGGc -5'
25965 3' -55.1 NC_005337.1 + 8735 0.66 0.891974
Target:  5'- -cGUCCuuGGCGCGG--AUGUCGgcGCCGu -3'
miRNA:   3'- uaCAGGu-UCGCGCCcaUGCAGU--UGGC- -5'
25965 3' -55.1 NC_005337.1 + 104300 0.66 0.891974
Target:  5'- -gGUCCGcgagGGCGCGGcggcgcucugcGUGCGUCccgucgguGCCGa -3'
miRNA:   3'- uaCAGGU----UCGCGCC-----------CAUGCAGu-------UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.