miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25965 3' -55.1 NC_005337.1 + 7000 0.67 0.885059
Target:  5'- uUGUCCAuGGCGCGG--ACGUCcgcGCCc -3'
miRNA:   3'- uACAGGU-UCGCGCCcaUGCAGu--UGGc -5'
25965 3' -55.1 NC_005337.1 + 127774 0.67 0.885059
Target:  5'- -cGUCUugacgGAGCGCGuGGUGCGgguGCUGg -3'
miRNA:   3'- uaCAGG-----UUCGCGC-CCAUGCaguUGGC- -5'
25965 3' -55.1 NC_005337.1 + 131757 0.67 0.885059
Target:  5'- -cGUCCGGGCcucCGaGGUGCGgCAGCUGc -3'
miRNA:   3'- uaCAGGUUCGc--GC-CCAUGCaGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 64441 0.67 0.885059
Target:  5'- cGUGUCC-AGUGUGGuGUACG-CGuCCGu -3'
miRNA:   3'- -UACAGGuUCGCGCC-CAUGCaGUuGGC- -5'
25965 3' -55.1 NC_005337.1 + 35034 0.67 0.877914
Target:  5'- -cGUCCGcggcgAGCGCGuGGUggaccGCGUCGAaguCCGc -3'
miRNA:   3'- uaCAGGU-----UCGCGC-CCA-----UGCAGUU---GGC- -5'
25965 3' -55.1 NC_005337.1 + 111223 0.67 0.877914
Target:  5'- --uUCCGGcGCGCGGcGUGCGUCAcgaaCGa -3'
miRNA:   3'- uacAGGUU-CGCGCC-CAUGCAGUug--GC- -5'
25965 3' -55.1 NC_005337.1 + 122078 0.67 0.870542
Target:  5'- -cGUgCAAGCGCucGGUGC-UCGACCa -3'
miRNA:   3'- uaCAgGUUCGCGc-CCAUGcAGUUGGc -5'
25965 3' -55.1 NC_005337.1 + 30858 0.67 0.870542
Target:  5'- gAUGUCCGAGaaggucauCGCGGGgAUGUCGcGCUGc -3'
miRNA:   3'- -UACAGGUUC--------GCGCCCaUGCAGU-UGGC- -5'
25965 3' -55.1 NC_005337.1 + 47305 0.67 0.862948
Target:  5'- -gGUCCGAcgcGCGCGaGGUcuuCGUCAACa- -3'
miRNA:   3'- uaCAGGUU---CGCGC-CCAu--GCAGUUGgc -5'
25965 3' -55.1 NC_005337.1 + 12923 0.67 0.862948
Target:  5'- cGUGcgCCGAGUgGCuGGUgcggcGCGUCAACCGu -3'
miRNA:   3'- -UACa-GGUUCG-CGcCCA-----UGCAGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 12969 0.67 0.855141
Target:  5'- -gGUCCGAG-GCGGGU-CGgaggCgAGCCGg -3'
miRNA:   3'- uaCAGGUUCgCGCCCAuGCa---G-UUGGC- -5'
25965 3' -55.1 NC_005337.1 + 67552 0.68 0.847124
Target:  5'- cGUGUCCGGGUugagGCGGaagGCGUCGuugGCCa -3'
miRNA:   3'- -UACAGGUUCG----CGCCca-UGCAGU---UGGc -5'
25965 3' -55.1 NC_005337.1 + 85633 0.68 0.847124
Target:  5'- -cGUCCAGcuGCGCGcugGCGUCcGCCGa -3'
miRNA:   3'- uaCAGGUU--CGCGCccaUGCAGuUGGC- -5'
25965 3' -55.1 NC_005337.1 + 95246 0.68 0.846311
Target:  5'- gGUGUCgAAGCGCcGGaugGCGuucagggUCAGCCGg -3'
miRNA:   3'- -UACAGgUUCGCGcCCa--UGC-------AGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 102246 0.68 0.838906
Target:  5'- -cGUgCAgacGGC-CGGGUGCGUCA-CCGu -3'
miRNA:   3'- uaCAgGU---UCGcGCCCAUGCAGUuGGC- -5'
25965 3' -55.1 NC_005337.1 + 114411 0.68 0.830493
Target:  5'- --uUCCAGGUGCaGGUGCGUaaCAGCgGa -3'
miRNA:   3'- uacAGGUUCGCGcCCAUGCA--GUUGgC- -5'
25965 3' -55.1 NC_005337.1 + 31413 0.68 0.830493
Target:  5'- --aUCCAggaguAGUGCGGGUGCGUgCGgaagcuGCCGu -3'
miRNA:   3'- uacAGGU-----UCGCGCCCAUGCA-GU------UGGC- -5'
25965 3' -55.1 NC_005337.1 + 124435 0.68 0.830493
Target:  5'- -cG-CCGcGCGCGGGUGCGg-GGCCu -3'
miRNA:   3'- uaCaGGUuCGCGCCCAUGCagUUGGc -5'
25965 3' -55.1 NC_005337.1 + 126038 0.68 0.813118
Target:  5'- uGUGUCuCAuGCGCGccGGUGCGgacgCGACCc -3'
miRNA:   3'- -UACAG-GUuCGCGC--CCAUGCa---GUUGGc -5'
25965 3' -55.1 NC_005337.1 + 44484 0.68 0.804171
Target:  5'- -aGUUCgAGGCGCGGccGCGUCA-CCGa -3'
miRNA:   3'- uaCAGG-UUCGCGCCcaUGCAGUuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.