miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25965 3' -55.1 NC_005337.1 + 1374 0.69 0.766866
Target:  5'- --aUCUGAGCGCGGGUACacc-GCCGa -3'
miRNA:   3'- uacAGGUUCGCGCCCAUGcaguUGGC- -5'
25965 3' -55.1 NC_005337.1 + 1431 0.66 0.891974
Target:  5'- -gGUCUgcGAGCGCGgcggcgccgaGGUGCG-CGACCa -3'
miRNA:   3'- uaCAGG--UUCGCGC----------CCAUGCaGUUGGc -5'
25965 3' -55.1 NC_005337.1 + 2368 0.69 0.757207
Target:  5'- -cG-CCAGGUGCucuaucGGGUGCGUCGACg- -3'
miRNA:   3'- uaCaGGUUCGCG------CCCAUGCAGUUGgc -5'
25965 3' -55.1 NC_005337.1 + 6135 0.66 0.917245
Target:  5'- -cGUCCGAGCGCGuuUcgcgcguucacGCGgCAGCCGc -3'
miRNA:   3'- uaCAGGUUCGCGCccA-----------UGCaGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 7000 0.67 0.885059
Target:  5'- uUGUCCAuGGCGCGG--ACGUCcgcGCCc -3'
miRNA:   3'- uACAGGU-UCGCGCCcaUGCAGu--UGGc -5'
25965 3' -55.1 NC_005337.1 + 8213 0.66 0.898653
Target:  5'- -cGUCCAGGuCGgcaaGGGUcGCGUCcgcACCGg -3'
miRNA:   3'- uaCAGGUUC-GCg---CCCA-UGCAGu--UGGC- -5'
25965 3' -55.1 NC_005337.1 + 8735 0.66 0.891974
Target:  5'- -cGUCCuuGGCGCGG--AUGUCGgcGCCGu -3'
miRNA:   3'- uaCAGGu-UCGCGCCcaUGCAGU--UGGC- -5'
25965 3' -55.1 NC_005337.1 + 11807 0.66 0.922953
Target:  5'- cGUGgCCAGGUGCcGGUugGUCGAgUa -3'
miRNA:   3'- -UACaGGUUCGCGcCCAugCAGUUgGc -5'
25965 3' -55.1 NC_005337.1 + 12923 0.67 0.862948
Target:  5'- cGUGcgCCGAGUgGCuGGUgcggcGCGUCAACCGu -3'
miRNA:   3'- -UACa-GGUUCG-CGcCCA-----UGCAGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 12969 0.67 0.855141
Target:  5'- -gGUCCGAG-GCGGGU-CGgaggCgAGCCGg -3'
miRNA:   3'- uaCAGGUUCgCGCCCAuGCa---G-UUGGC- -5'
25965 3' -55.1 NC_005337.1 + 17515 0.66 0.922953
Target:  5'- uUGUUCcGGCGCaGGUGCuccuucaUCAGCCGc -3'
miRNA:   3'- uACAGGuUCGCGcCCAUGc------AGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 18344 0.66 0.917245
Target:  5'- -gGUCCGAGCaCGGGccCGU-GGCCGa -3'
miRNA:   3'- uaCAGGUUCGcGCCCauGCAgUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 25287 0.66 0.897996
Target:  5'- -aGUUCGcgcgcacGGCggGCGGGccgcGCGUCGACCGg -3'
miRNA:   3'- uaCAGGU-------UCG--CGCCCa---UGCAGUUGGC- -5'
25965 3' -55.1 NC_005337.1 + 29766 0.66 0.898653
Target:  5'- -cGUCCAaccgGGCGUccGGGUGCG-CGAgCGc -3'
miRNA:   3'- uaCAGGU----UCGCG--CCCAUGCaGUUgGC- -5'
25965 3' -55.1 NC_005337.1 + 30858 0.67 0.870542
Target:  5'- gAUGUCCGAGaaggucauCGCGGGgAUGUCGcGCUGc -3'
miRNA:   3'- -UACAGGUUC--------GCGCCCaUGCAGU-UGGC- -5'
25965 3' -55.1 NC_005337.1 + 31413 0.68 0.830493
Target:  5'- --aUCCAggaguAGUGCGGGUGCGUgCGgaagcuGCCGu -3'
miRNA:   3'- uacAGGU-----UCGCGCCCAUGCA-GU------UGGC- -5'
25965 3' -55.1 NC_005337.1 + 35034 0.67 0.877914
Target:  5'- -cGUCCGcggcgAGCGCGuGGUggaccGCGUCGAaguCCGc -3'
miRNA:   3'- uaCAGGU-----UCGCGC-CCA-----UGCAGUU---GGC- -5'
25965 3' -55.1 NC_005337.1 + 35702 0.68 0.804171
Target:  5'- cUGg-CGAGCGCGGGcucCGUCuACCGg -3'
miRNA:   3'- uACagGUUCGCGCCCau-GCAGuUGGC- -5'
25965 3' -55.1 NC_005337.1 + 36181 0.73 0.546426
Target:  5'- -cGUCCGuugauggcgcuguacAGCGCGGGUuCGUCGuuuuuugcGCCGg -3'
miRNA:   3'- uaCAGGU---------------UCGCGCCCAuGCAGU--------UGGC- -5'
25965 3' -55.1 NC_005337.1 + 38972 0.74 0.512337
Target:  5'- -cGcCCGAGUGCGcGUGCGUCAccgGCCGg -3'
miRNA:   3'- uaCaGGUUCGCGCcCAUGCAGU---UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.