miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25965 5' -58 NC_005337.1 + 122604 0.66 0.817496
Target:  5'- gACCAcGcgGGCgGCgGCGUGUuCUUCUCGg -3'
miRNA:   3'- -UGGU-CuaCCG-CG-UGCGCGcGAAGAGC- -5'
25965 5' -58 NC_005337.1 + 54260 0.66 0.817496
Target:  5'- gGCCGGGUgcGGCGCuuaGCGCcGCGCgg--CGa -3'
miRNA:   3'- -UGGUCUA--CCGCG---UGCG-CGCGaagaGC- -5'
25965 5' -58 NC_005337.1 + 2930 0.66 0.817496
Target:  5'- cGCCGGAgugccgacGCGCACgGCGCGCaugagcgcggUCUCc -3'
miRNA:   3'- -UGGUCUac------CGCGUG-CGCGCGa---------AGAGc -5'
25965 5' -58 NC_005337.1 + 115301 0.66 0.817496
Target:  5'- -gCGGA-GGaguaCACGCGcCGCUUCUCGu -3'
miRNA:   3'- ugGUCUaCCgc--GUGCGC-GCGAAGAGC- -5'
25965 5' -58 NC_005337.1 + 122528 0.66 0.817496
Target:  5'- uGCUGGcccUGGCGCggcgACGCGCGCUgcagC-CGg -3'
miRNA:   3'- -UGGUCu--ACCGCG----UGCGCGCGAa---GaGC- -5'
25965 5' -58 NC_005337.1 + 91009 0.66 0.817496
Target:  5'- -gCAGGUGGCGCugaggaacaGCGCGUcaGCggugCUCa -3'
miRNA:   3'- ugGUCUACCGCG---------UGCGCG--CGaa--GAGc -5'
25965 5' -58 NC_005337.1 + 94029 0.66 0.817496
Target:  5'- uCguGGUGGCGCgGCGCGgCGCggccgacgacUUCUCc -3'
miRNA:   3'- uGguCUACCGCG-UGCGC-GCG----------AAGAGc -5'
25965 5' -58 NC_005337.1 + 1468 0.66 0.817496
Target:  5'- -gCGGAuccguUGGCGUcCGCGCGCcccacCUCGa -3'
miRNA:   3'- ugGUCU-----ACCGCGuGCGCGCGaa---GAGC- -5'
25965 5' -58 NC_005337.1 + 92763 0.66 0.817496
Target:  5'- -gCGGAUGGcCGCGCGgaUGCGCUccaUCGc -3'
miRNA:   3'- ugGUCUACC-GCGUGC--GCGCGAag-AGC- -5'
25965 5' -58 NC_005337.1 + 41557 0.66 0.817496
Target:  5'- uCCAGcaGGCGCACGCGCuuggagUCgUCGa -3'
miRNA:   3'- uGGUCuaCCGCGUGCGCGcga---AG-AGC- -5'
25965 5' -58 NC_005337.1 + 18657 0.66 0.816633
Target:  5'- cGCCAGGucggcggUGGCGUACcCGCGCagCcCGg -3'
miRNA:   3'- -UGGUCU-------ACCGCGUGcGCGCGaaGaGC- -5'
25965 5' -58 NC_005337.1 + 75417 0.66 0.808795
Target:  5'- -gCGGAcGGCGCGCgaGCGCGCgaagUCcaggUCGa -3'
miRNA:   3'- ugGUCUaCCGCGUG--CGCGCGa---AG----AGC- -5'
25965 5' -58 NC_005337.1 + 32174 0.66 0.808795
Target:  5'- gGCCAGGUGGUGaucuucucgauCAUGUugauGCcgaGCUUCUCGa -3'
miRNA:   3'- -UGGUCUACCGC-----------GUGCG----CG---CGAAGAGC- -5'
25965 5' -58 NC_005337.1 + 60922 0.66 0.808795
Target:  5'- uGCaGGAUGGCGUACaCGCGgUUCgUCu -3'
miRNA:   3'- -UGgUCUACCGCGUGcGCGCgAAG-AGc -5'
25965 5' -58 NC_005337.1 + 74357 0.66 0.808795
Target:  5'- aACCGGcggcugGGCaGCACGCGgGuCUUC-CGg -3'
miRNA:   3'- -UGGUCua----CCG-CGUGCGCgC-GAAGaGC- -5'
25965 5' -58 NC_005337.1 + 56368 0.66 0.808795
Target:  5'- uGCUgaAGAUGGCGCGCGCGgGgUa---- -3'
miRNA:   3'- -UGG--UCUACCGCGUGCGCgCgAagagc -5'
25965 5' -58 NC_005337.1 + 68956 0.66 0.808795
Target:  5'- cGCgGGAcagcGGCauGCGCGCGCGCagCUUGc -3'
miRNA:   3'- -UGgUCUa---CCG--CGUGCGCGCGaaGAGC- -5'
25965 5' -58 NC_005337.1 + 65038 0.66 0.808795
Target:  5'- cACCGGcacguccaGGCGCGCGCGCaCgUUCUgGa -3'
miRNA:   3'- -UGGUCua------CCGCGUGCGCGcG-AAGAgC- -5'
25965 5' -58 NC_005337.1 + 30720 0.66 0.799936
Target:  5'- cGCCGGGaaGuCGCagaagucguacaGCGCGCGCUcCUCGg -3'
miRNA:   3'- -UGGUCUacC-GCG------------UGCGCGCGAaGAGC- -5'
25965 5' -58 NC_005337.1 + 85389 0.66 0.799936
Target:  5'- cACUGGAUGcCGUGCGCGgCGCU-CUCc -3'
miRNA:   3'- -UGGUCUACcGCGUGCGC-GCGAaGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.