miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25966 3' -58.8 NC_005337.1 + 99536 0.65 0.806368
Target:  5'- gGCCCGGugc--GCCGCCGAcugcucgcgcgagGaGGCCCUg -3'
miRNA:   3'- -UGGGCUuguauCGGCGGCU-------------C-CUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 43543 0.66 0.798486
Target:  5'- uGCuCCGcguCGUGGaCCGCUGc-GACCCCg -3'
miRNA:   3'- -UG-GGCuu-GUAUC-GGCGGCucCUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 39573 0.66 0.798486
Target:  5'- uACUCGuccuCGUGGaCGCCGAGuauugcGCCCCg -3'
miRNA:   3'- -UGGGCuu--GUAUCgGCGGCUCc-----UGGGG- -5'
25966 3' -58.8 NC_005337.1 + 128215 0.66 0.798486
Target:  5'- gGCgCCGcuCGUGGCCGCgGGcgcGGACaUCCa -3'
miRNA:   3'- -UG-GGCuuGUAUCGGCGgCU---CCUG-GGG- -5'
25966 3' -58.8 NC_005337.1 + 8142 0.66 0.798486
Target:  5'- gACgCCGGGCAUGGCCGCgCGcacGGcGugCgCg -3'
miRNA:   3'- -UG-GGCUUGUAUCGGCG-GC---UC-CugGgG- -5'
25966 3' -58.8 NC_005337.1 + 16961 0.66 0.797602
Target:  5'- aACCCGAcgcgugcgcggagGCGUccaccuccAGCaCGC--GGGACCCCg -3'
miRNA:   3'- -UGGGCU-------------UGUA--------UCG-GCGgcUCCUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 105208 0.66 0.797602
Target:  5'- gGCCUGGG---GGCCGCUGAgcugcgcgcucgcGGGCgCCCg -3'
miRNA:   3'- -UGGGCUUguaUCGGCGGCU-------------CCUG-GGG- -5'
25966 3' -58.8 NC_005337.1 + 111203 0.66 0.793165
Target:  5'- uCCCGGACcccgAGCCGCCcacgagcgccauccuGAaGGGCgCCu -3'
miRNA:   3'- uGGGCUUGua--UCGGCGG---------------CU-CCUGgGG- -5'
25966 3' -58.8 NC_005337.1 + 117808 0.66 0.78959
Target:  5'- gGCauGAacgGCGUGGCgC-CCGGGGACCCg -3'
miRNA:   3'- -UGggCU---UGUAUCG-GcGGCUCCUGGGg -5'
25966 3' -58.8 NC_005337.1 + 112496 0.66 0.78959
Target:  5'- gGCCCGcAGCAcGG-CGUCGAaGACCUCg -3'
miRNA:   3'- -UGGGC-UUGUaUCgGCGGCUcCUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 68252 0.66 0.78959
Target:  5'- gGCCgGcGCGUGGgcgagCGUCGAGGACUUCg -3'
miRNA:   3'- -UGGgCuUGUAUCg----GCGGCUCCUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 15568 0.66 0.78959
Target:  5'- gGCuuGAACGgcgaggcggAGCCGUCGuaguGGAaCCCg -3'
miRNA:   3'- -UGggCUUGUa--------UCGGCGGCu---CCUgGGG- -5'
25966 3' -58.8 NC_005337.1 + 132304 0.66 0.78959
Target:  5'- gACCCGGcguGCAcGGCgGCgGAGGgggcgcugGCCCa -3'
miRNA:   3'- -UGGGCU---UGUaUCGgCGgCUCC--------UGGGg -5'
25966 3' -58.8 NC_005337.1 + 92513 0.66 0.78959
Target:  5'- -gCCGAcggcuacauCAUAGCCGCCGAGcagcaGCgCCa -3'
miRNA:   3'- ugGGCUu--------GUAUCGGCGGCUCc----UGgGG- -5'
25966 3' -58.8 NC_005337.1 + 28987 0.66 0.788692
Target:  5'- gACUgCGGGCAgcggcGGCCGCCcAGGgucagccacggcgGCCCCa -3'
miRNA:   3'- -UGG-GCUUGUa----UCGGCGGcUCC-------------UGGGG- -5'
25966 3' -58.8 NC_005337.1 + 2532 0.66 0.784186
Target:  5'- gGCCCGGACGUccgGGCCccgggugaagaaguaGUCGuacagcgcGGACUCCa -3'
miRNA:   3'- -UGGGCUUGUA---UCGG---------------CGGCu-------CCUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 105552 0.66 0.784186
Target:  5'- cACCCGcuggggcaggacgcACAcGGaCC-CCGAGGAUCCCa -3'
miRNA:   3'- -UGGGCu-------------UGUaUC-GGcGGCUCCUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 105256 0.66 0.780556
Target:  5'- cACCaCG-GCuuggGGCCGCCGuGGcugACCCUg -3'
miRNA:   3'- -UGG-GCuUGua--UCGGCGGCuCC---UGGGG- -5'
25966 3' -58.8 NC_005337.1 + 22461 0.66 0.780556
Target:  5'- uCCCGGGCGauauccUGGgCGUgGuGGACUCCg -3'
miRNA:   3'- uGGGCUUGU------AUCgGCGgCuCCUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 133508 0.66 0.780556
Target:  5'- gGCgCGcagcACAUGGCCGCCGucgaggccgcGGGCgCCg -3'
miRNA:   3'- -UGgGCu---UGUAUCGGCGGCu---------CCUGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.