miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25966 3' -58.8 NC_005337.1 + 133508 0.66 0.780556
Target:  5'- gGCgCGcagcACAUGGCCGCCGucgaggccgcGGGCgCCg -3'
miRNA:   3'- -UGgGCu---UGUAUCGGCGGCu---------CCUGgGG- -5'
25966 3' -58.8 NC_005337.1 + 115197 0.66 0.780556
Target:  5'- uCCUGGACAcgguGCCGCUGcGGGCgCUg -3'
miRNA:   3'- uGGGCUUGUau--CGGCGGCuCCUGgGG- -5'
25966 3' -58.8 NC_005337.1 + 24631 0.66 0.780556
Target:  5'- uACCUGAugAgcGCCaaCGAGGACaucaCCg -3'
miRNA:   3'- -UGGGCUugUauCGGcgGCUCCUGg---GG- -5'
25966 3' -58.8 NC_005337.1 + 60206 0.66 0.780556
Target:  5'- cGCCCGAGgAcuuccccagcUGGCagaCGAGGuCCCCg -3'
miRNA:   3'- -UGGGCUUgU----------AUCGgcgGCUCCuGGGG- -5'
25966 3' -58.8 NC_005337.1 + 72195 0.66 0.771395
Target:  5'- uACCUGAACAacuUCGCCGAcGACCaCCc -3'
miRNA:   3'- -UGGGCUUGUaucGGCGGCUcCUGG-GG- -5'
25966 3' -58.8 NC_005337.1 + 118304 0.66 0.771395
Target:  5'- aACCCGcaccuucACGUAGaCGaggaCGuGGACCCCu -3'
miRNA:   3'- -UGGGCu------UGUAUCgGCg---GCuCCUGGGG- -5'
25966 3' -58.8 NC_005337.1 + 93267 0.66 0.771395
Target:  5'- gGCCUcaagcgGGACAUccuGGCCGCCGuggcagagcGGGACUgCg -3'
miRNA:   3'- -UGGG------CUUGUA---UCGGCGGC---------UCCUGGgG- -5'
25966 3' -58.8 NC_005337.1 + 104509 0.66 0.771395
Target:  5'- gUCCaGACAgugAGUCGuUCGAGGAgCCCg -3'
miRNA:   3'- uGGGcUUGUa--UCGGC-GGCUCCUgGGG- -5'
25966 3' -58.8 NC_005337.1 + 60752 0.66 0.771395
Target:  5'- uACUCGAGu---GCCGCCucgcGGGugCCCa -3'
miRNA:   3'- -UGGGCUUguauCGGCGGc---UCCugGGG- -5'
25966 3' -58.8 NC_005337.1 + 36532 0.66 0.762114
Target:  5'- cGCCgCGGGCGUccccGGCgGCUGGGcGGCgCCg -3'
miRNA:   3'- -UGG-GCUUGUA----UCGgCGGCUC-CUGgGG- -5'
25966 3' -58.8 NC_005337.1 + 18747 0.66 0.762114
Target:  5'- gACCgGAACAU-GCCGUacaCGAuGGACUCg -3'
miRNA:   3'- -UGGgCUUGUAuCGGCG---GCU-CCUGGGg -5'
25966 3' -58.8 NC_005337.1 + 3278 0.67 0.752721
Target:  5'- uCUCGGACAU-GCCGuuGcGGugCUCg -3'
miRNA:   3'- uGGGCUUGUAuCGGCggCuCCugGGG- -5'
25966 3' -58.8 NC_005337.1 + 34029 0.67 0.752721
Target:  5'- uCCCGGuCAUGGCgGgCG-GGACCgCg -3'
miRNA:   3'- uGGGCUuGUAUCGgCgGCuCCUGGgG- -5'
25966 3' -58.8 NC_005337.1 + 110606 0.67 0.752721
Target:  5'- uGCgCGAGCAggauGCCgggGUCGAGGuCCCUc -3'
miRNA:   3'- -UGgGCUUGUau--CGG---CGGCUCCuGGGG- -5'
25966 3' -58.8 NC_005337.1 + 14917 0.67 0.752721
Target:  5'- uCCCaGGAUgcuGCCGCUGGGGAgCCa -3'
miRNA:   3'- uGGG-CUUGuauCGGCGGCUCCUgGGg -5'
25966 3' -58.8 NC_005337.1 + 58014 0.67 0.749883
Target:  5'- cGCCCGGGCGUgcucggccaGGCCGCgcucuuCGAcGGcggcgugcucgccaACCCCg -3'
miRNA:   3'- -UGGGCUUGUA---------UCGGCG------GCU-CC--------------UGGGG- -5'
25966 3' -58.8 NC_005337.1 + 41168 0.67 0.743226
Target:  5'- uCCagGGGCAgguccuugauGCCGCgGAGGAgCCCg -3'
miRNA:   3'- uGGg-CUUGUau--------CGGCGgCUCCUgGGG- -5'
25966 3' -58.8 NC_005337.1 + 74887 0.67 0.743226
Target:  5'- cGCCCGAcCGaGGaCGCCGGGGGCgUg -3'
miRNA:   3'- -UGGGCUuGUaUCgGCGGCUCCUGgGg -5'
25966 3' -58.8 NC_005337.1 + 115363 0.67 0.733637
Target:  5'- uGCCCGcgGACGUGGUggggagcaCGCaccuggaaGAGGugCCCu -3'
miRNA:   3'- -UGGGC--UUGUAUCG--------GCGg-------CUCCugGGG- -5'
25966 3' -58.8 NC_005337.1 + 123890 0.67 0.733637
Target:  5'- aGCCCGAgcaccagcuGCGUGGCCGCCu-GGuuCUg -3'
miRNA:   3'- -UGGGCU---------UGUAUCGGCGGcuCCugGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.