miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25967 3' -58.1 NC_005337.1 + 74980 0.66 0.787232
Target:  5'- --cGAUAGCGGccgggucgaccacguACACgagGCGGCCGCCGc -3'
miRNA:   3'- cacUUGUCGCC---------------UGUG---CGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 95032 0.66 0.783523
Target:  5'- -gGGACGGCGGGCAgGaacGCCugCGc -3'
miRNA:   3'- caCUUGUCGCCUGUgCgc-CGGugGUu -5'
25967 3' -58.1 NC_005337.1 + 120302 0.66 0.783523
Target:  5'- -cGAgcACGGCGG-CGCGguacaCGGUCGCCGAc -3'
miRNA:   3'- caCU--UGUCGCCuGUGC-----GCCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 767 0.66 0.783523
Target:  5'- --cGACGGCGGcCAugugcUGCGcGCCGCCGAc -3'
miRNA:   3'- cacUUGUCGCCuGU-----GCGC-CGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 767 0.66 0.783523
Target:  5'- --cGACGGCGGcCAugugcUGCGcGCCGCCGAc -3'
miRNA:   3'- cacUUGUCGCCuGU-----GCGC-CGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 74563 0.66 0.782593
Target:  5'- cGUGAugcuggccgcgcgGCAcGCGGACGCGCuGUCGCgCAu -3'
miRNA:   3'- -CACU-------------UGU-CGCCUGUGCGcCGGUG-GUu -5'
25967 3' -58.1 NC_005337.1 + 78365 0.66 0.780727
Target:  5'- gGUGGGCAGCGuGACGCugaGGCCcucgcggaugcugcGCCGc -3'
miRNA:   3'- -CACUUGUCGC-CUGUGcg-CCGG--------------UGGUu -5'
25967 3' -58.1 NC_005337.1 + 77144 0.66 0.774156
Target:  5'- ---cACGGCGuccaGGCugGCGGCgACCAc -3'
miRNA:   3'- cacuUGUCGC----CUGugCGCCGgUGGUu -5'
25967 3' -58.1 NC_005337.1 + 84208 0.66 0.774156
Target:  5'- -cGGACAcaCGGGCugcugugcggGCGCGGCCugCGGg -3'
miRNA:   3'- caCUUGUc-GCCUG----------UGCGCCGGugGUU- -5'
25967 3' -58.1 NC_005337.1 + 101185 0.66 0.774156
Target:  5'- -aGGGCAGCGGGC-CGC-GUCGCUg- -3'
miRNA:   3'- caCUUGUCGCCUGuGCGcCGGUGGuu -5'
25967 3' -58.1 NC_005337.1 + 26700 0.66 0.774156
Target:  5'- cGUGGACAgcacGCGGGCGaagacCGCGGCguuGCCGu -3'
miRNA:   3'- -CACUUGU----CGCCUGU-----GCGCCGg--UGGUu -5'
25967 3' -58.1 NC_005337.1 + 18452 0.66 0.774156
Target:  5'- -cGGGCGGgGGACugGCGgggaguccGCgCGCCAu -3'
miRNA:   3'- caCUUGUCgCCUGugCGC--------CG-GUGGUu -5'
25967 3' -58.1 NC_005337.1 + 6579 0.66 0.774156
Target:  5'- -aGAACc-CGGu--CGCGGCCACCGg -3'
miRNA:   3'- caCUUGucGCCuguGCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 103441 0.66 0.774156
Target:  5'- -aGAAC-GCGcuggucucGACGCGCuGCCACCAc -3'
miRNA:   3'- caCUUGuCGC--------CUGUGCGcCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 89345 0.66 0.764658
Target:  5'- aUGAGCGauccgcGCGGACACGUGuCCACgAu -3'
miRNA:   3'- cACUUGU------CGCCUGUGCGCcGGUGgUu -5'
25967 3' -58.1 NC_005337.1 + 60916 0.66 0.764658
Target:  5'- -cGGccACGGuCGGGCACGCGacgcGCCACUg- -3'
miRNA:   3'- caCU--UGUC-GCCUGUGCGC----CGGUGGuu -5'
25967 3' -58.1 NC_005337.1 + 80596 0.66 0.764658
Target:  5'- ----uCAGCGcGGCcuccuUGCGGCCGCCGAc -3'
miRNA:   3'- cacuuGUCGC-CUGu----GCGCCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 39084 0.66 0.764658
Target:  5'- -aGAugGGC-GACAuCGUGGUCGCCGu -3'
miRNA:   3'- caCUugUCGcCUGU-GCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 99640 0.66 0.764658
Target:  5'- -gGGACA-CGGACguGCGCGGCauCGCCGc -3'
miRNA:   3'- caCUUGUcGCCUG--UGCGCCG--GUGGUu -5'
25967 3' -58.1 NC_005337.1 + 71107 0.66 0.763702
Target:  5'- -cGGGCGGCGGGCucagcacguccucGgGCGGCggCACCGg -3'
miRNA:   3'- caCUUGUCGCCUG-------------UgCGCCG--GUGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.