miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25967 3' -58.1 NC_005337.1 + 132414 1.05 0.002466
Target:  5'- gGUGAACAGCGGACACGCGGCCACCAAc -3'
miRNA:   3'- -CACUUGUCGCCUGUGCGCCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 119341 0.83 0.090617
Target:  5'- --cGACGGUGGACACaGCGGCCACCAc -3'
miRNA:   3'- cacUUGUCGCCUGUG-CGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 112348 0.81 0.109184
Target:  5'- -cGAGCucGGCGGAgCGCGCGGCCACCu- -3'
miRNA:   3'- caCUUG--UCGCCU-GUGCGCCGGUGGuu -5'
25967 3' -58.1 NC_005337.1 + 102156 0.8 0.131272
Target:  5'- cGUGGACAcGCuGGACAUGCGcGCCGCCAu -3'
miRNA:   3'- -CACUUGU-CG-CCUGUGCGC-CGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 99094 0.8 0.138305
Target:  5'- uGUGGACGGCGGACgACGCcGUCGCCGAc -3'
miRNA:   3'- -CACUUGUCGCCUG-UGCGcCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 90854 0.79 0.15302
Target:  5'- cUGGACAGCgucuccaGGACcaGCGCGGCCACCGu -3'
miRNA:   3'- cACUUGUCG-------CCUG--UGCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 16648 0.77 0.208055
Target:  5'- ---cACGGCGGugACGCGGCgGCCGGu -3'
miRNA:   3'- cacuUGUCGCCugUGCGCCGgUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 125967 0.76 0.241232
Target:  5'- cGUGAACGcGCGGaACGCGCGGCUGCa-- -3'
miRNA:   3'- -CACUUGU-CGCC-UGUGCGCCGGUGguu -5'
25967 3' -58.1 NC_005337.1 + 64414 0.75 0.265723
Target:  5'- --cAGCAGCGGcCGCuugGCGGCCACCAGc -3'
miRNA:   3'- cacUUGUCGCCuGUG---CGCCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 80127 0.75 0.292189
Target:  5'- cGUGGACaccgGGCGcGACACGCGGCUcCCGu -3'
miRNA:   3'- -CACUUG----UCGC-CUGUGCGCCGGuGGUu -5'
25967 3' -58.1 NC_005337.1 + 120143 0.75 0.298421
Target:  5'- -cGAGCucGCGGACuucguccGCGUGGCCACCGc -3'
miRNA:   3'- caCUUGu-CGCCUG-------UGCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 101257 0.75 0.298421
Target:  5'- cUGGACGgcGCGGACGCgaagaucGCGGCCAUCGAg -3'
miRNA:   3'- cACUUGU--CGCCUGUG-------CGCCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 97995 0.75 0.299119
Target:  5'- cGUGGccgcguucgcGCAGCGGcugguCGCGCuGGCCACCGAc -3'
miRNA:   3'- -CACU----------UGUCGCCu----GUGCG-CCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 84094 0.74 0.306176
Target:  5'- -aGAGC-GCGGACacggGCGCGGUCGCCGu -3'
miRNA:   3'- caCUUGuCGCCUG----UGCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 64549 0.74 0.31336
Target:  5'- -aGGACGGCaccuuccuGGAcCGCGUGGCCGCCAc -3'
miRNA:   3'- caCUUGUCG--------CCU-GUGCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 90348 0.74 0.328108
Target:  5'- -cGAGCAGCGGccagcggccguuACGCGCGGCCucuucCCGg -3'
miRNA:   3'- caCUUGUCGCC------------UGUGCGCCGGu----GGUu -5'
25967 3' -58.1 NC_005337.1 + 65767 0.73 0.367192
Target:  5'- -cGAGC-GCGGGCGCacccaCGGCCGCCAGc -3'
miRNA:   3'- caCUUGuCGCCUGUGc----GCCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 77200 0.73 0.374559
Target:  5'- -cGAACAGCGGGCGCucgcagaGCGGCCugGCUg- -3'
miRNA:   3'- caCUUGUCGCCUGUG-------CGCCGG--UGGuu -5'
25967 3' -58.1 NC_005337.1 + 38346 0.73 0.375383
Target:  5'- cUGGAC-GUGGagcgcgaggcGCGCGCGGCCGCCGu -3'
miRNA:   3'- cACUUGuCGCC----------UGUGCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 96102 0.73 0.375383
Target:  5'- -cGGgcGCGGCGGAggaCAUGCGGCCGCgCAGg -3'
miRNA:   3'- caCU--UGUCGCCU---GUGCGCCGGUG-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.