miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25967 3' -58.1 NC_005337.1 + 105491 0.66 0.761785
Target:  5'- aUGAGCAagauccgggaguucGUGGcGCAgaucauCGCGGCCGCCAu -3'
miRNA:   3'- cACUUGU--------------CGCC-UGU------GCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 47974 0.66 0.755041
Target:  5'- aGUGcGGC-GCGGACGCGUccaGGCCGCa-- -3'
miRNA:   3'- -CAC-UUGuCGCCUGUGCG---CCGGUGguu -5'
25967 3' -58.1 NC_005337.1 + 132093 0.66 0.755041
Target:  5'- -cGAGCGcgucGUGGACACGCuGGUCGCg-- -3'
miRNA:   3'- caCUUGU----CGCCUGUGCG-CCGGUGguu -5'
25967 3' -58.1 NC_005337.1 + 82159 0.66 0.752134
Target:  5'- -aGGccAUGGcCGGcccgucgcgcaccuGCACGCGGCCGCCGGg -3'
miRNA:   3'- caCU--UGUC-GCC--------------UGUGCGCCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 105432 0.66 0.745313
Target:  5'- gGUGcAUcGCGGAguaCAUGCuGGCCGCCAu -3'
miRNA:   3'- -CACuUGuCGCCU---GUGCG-CCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 28480 0.66 0.745313
Target:  5'- -gGAGCAcggaugcggccGCGcGGCGCGCGGUCGCgCGg -3'
miRNA:   3'- caCUUGU-----------CGC-CUGUGCGCCGGUG-GUu -5'
25967 3' -58.1 NC_005337.1 + 5726 0.66 0.745313
Target:  5'- -gGAGCGG-GGAgcCACGCGGCCGuagcacCCAu -3'
miRNA:   3'- caCUUGUCgCCU--GUGCGCCGGU------GGUu -5'
25967 3' -58.1 NC_005337.1 + 97606 0.66 0.745313
Target:  5'- cGUGGACA-CGGugGcCGCGGCCuuCGc -3'
miRNA:   3'- -CACUUGUcGCCugU-GCGCCGGugGUu -5'
25967 3' -58.1 NC_005337.1 + 47601 0.66 0.745313
Target:  5'- cGUGGGCGacGcCGcGCGCGCGGCCGCg-- -3'
miRNA:   3'- -CACUUGU--C-GCcUGUGCGCCGGUGguu -5'
25967 3' -58.1 NC_005337.1 + 128495 0.66 0.745313
Target:  5'- -cGGGCGugcgucgcguacGUGGuCGCGCGGCUGCCGc -3'
miRNA:   3'- caCUUGU------------CGCCuGUGCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 99002 0.66 0.744335
Target:  5'- -gGAGCcGCcccccgaGGuGCGCGCGGCCugCGAg -3'
miRNA:   3'- caCUUGuCG-------CC-UGUGCGCCGGugGUU- -5'
25967 3' -58.1 NC_005337.1 + 118393 0.66 0.744335
Target:  5'- -gGGGCAGCGGAacccgguCAUgagcgaggccgGCGaGCCGCCAAg -3'
miRNA:   3'- caCUUGUCGCCU-------GUG-----------CGC-CGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 133687 0.66 0.735485
Target:  5'- cGUGGcguucgcCGGCGGcuucCGCGCGGCCGCg-- -3'
miRNA:   3'- -CACUu------GUCGCCu---GUGCGCCGGUGguu -5'
25967 3' -58.1 NC_005337.1 + 31419 0.66 0.735485
Target:  5'- -cGAACAuGCacuuccuGGCGCGCGGCCcgACCAu -3'
miRNA:   3'- caCUUGU-CGc------CUGUGCGCCGG--UGGUu -5'
25967 3' -58.1 NC_005337.1 + 36652 0.66 0.735485
Target:  5'- cUGGACGucccguccGCGaaGGC-CGCGGCCACCGu -3'
miRNA:   3'- cACUUGU--------CGC--CUGuGCGCCGGUGGUu -5'
25967 3' -58.1 NC_005337.1 + 103416 0.66 0.735485
Target:  5'- --cAGCAGCugGGGCuuGUGGUCACCGAg -3'
miRNA:   3'- cacUUGUCG--CCUGugCGCCGGUGGUU- -5'
25967 3' -58.1 NC_005337.1 + 10676 0.66 0.735485
Target:  5'- -cGAGC-GCGGcACGUGCGGCCGCa-- -3'
miRNA:   3'- caCUUGuCGCC-UGUGCGCCGGUGguu -5'
25967 3' -58.1 NC_005337.1 + 10238 0.66 0.735485
Target:  5'- ---cGCGGCaGGCGCGCGGCCuuCGc -3'
miRNA:   3'- cacuUGUCGcCUGUGCGCCGGugGUu -5'
25967 3' -58.1 NC_005337.1 + 5553 0.66 0.735485
Target:  5'- --cAGCAGCGGcucgcgguACACGCGcGCCAgCCGc -3'
miRNA:   3'- cacUUGUCGCC--------UGUGCGC-CGGU-GGUu -5'
25967 3' -58.1 NC_005337.1 + 53850 0.66 0.735485
Target:  5'- -cGAGC-GCGGGCACgaccaGCGacGCCACCGc -3'
miRNA:   3'- caCUUGuCGCCUGUG-----CGC--CGGUGGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.