miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25967 5' -56.4 NC_005337.1 + 82612 0.66 0.860329
Target:  5'- gCGuCCAGGGgCGaCGGcGgGCGCUGGCGAc -3'
miRNA:   3'- -GC-GGUUUCaGC-GCU-CgCGCGACUGUU- -5'
25967 5' -56.4 NC_005337.1 + 45331 0.66 0.860329
Target:  5'- cCGCCuccgcgcGGUcCGCGAGCuCGCaGACGAc -3'
miRNA:   3'- -GCGGuu-----UCA-GCGCUCGcGCGaCUGUU- -5'
25967 5' -56.4 NC_005337.1 + 29049 0.66 0.860329
Target:  5'- aGCCGGGcgccCGCGAGCGCGCa----- -3'
miRNA:   3'- gCGGUUUca--GCGCUCGCGCGacuguu -5'
25967 5' -56.4 NC_005337.1 + 67951 0.66 0.860329
Target:  5'- uCGCCGAAGaCGaUGGGCuCGCUGgACAu -3'
miRNA:   3'- -GCGGUUUCaGC-GCUCGcGCGAC-UGUu -5'
25967 5' -56.4 NC_005337.1 + 19106 0.66 0.860329
Target:  5'- aCGCCGgcGUcCGCGGGCGC-C-GGCAu -3'
miRNA:   3'- -GCGGUuuCA-GCGCUCGCGcGaCUGUu -5'
25967 5' -56.4 NC_005337.1 + 19461 0.66 0.860329
Target:  5'- aGCUcguGUCGCaGAGC-CGCUGAUAc -3'
miRNA:   3'- gCGGuuuCAGCG-CUCGcGCGACUGUu -5'
25967 5' -56.4 NC_005337.1 + 133527 0.66 0.852438
Target:  5'- cCGUCGAGGcCGCGGGCGcCGCg----- -3'
miRNA:   3'- -GCGGUUUCaGCGCUCGC-GCGacuguu -5'
25967 5' -56.4 NC_005337.1 + 128216 0.66 0.852438
Target:  5'- gCGCCGcucguGGcCGCGGGCGCG--GACAu -3'
miRNA:   3'- -GCGGUu----UCaGCGCUCGCGCgaCUGUu -5'
25967 5' -56.4 NC_005337.1 + 131081 0.66 0.852438
Target:  5'- aGCgCGAGuUCGUGGucuGCGCGCUGGCc- -3'
miRNA:   3'- gCG-GUUUcAGCGCU---CGCGCGACUGuu -5'
25967 5' -56.4 NC_005337.1 + 128025 0.66 0.852438
Target:  5'- gCGCCAgcGUCaGCGAcgcugacucGCGCGggGACAc -3'
miRNA:   3'- -GCGGUuuCAG-CGCU---------CGCGCgaCUGUu -5'
25967 5' -56.4 NC_005337.1 + 133527 0.66 0.852438
Target:  5'- cCGUCGAGGcCGCGGGCGcCGCg----- -3'
miRNA:   3'- -GCGGUUUCaGCGCUCGC-GCGacuguu -5'
25967 5' -56.4 NC_005337.1 + 111640 0.66 0.852438
Target:  5'- gCGCCGAAGgccUCGCGGaucCGCGCcGGCu- -3'
miRNA:   3'- -GCGGUUUC---AGCGCUc--GCGCGaCUGuu -5'
25967 5' -56.4 NC_005337.1 + 75621 0.66 0.844341
Target:  5'- gCGCCGAGGacgCGCGGGCcgucgugauggGCGCguccGGCGu -3'
miRNA:   3'- -GCGGUUUCa--GCGCUCG-----------CGCGa---CUGUu -5'
25967 5' -56.4 NC_005337.1 + 47956 0.66 0.844341
Target:  5'- aCGCCAuguucgcgCGCGAGUGCgGCgcgGACGc -3'
miRNA:   3'- -GCGGUuuca----GCGCUCGCG-CGa--CUGUu -5'
25967 5' -56.4 NC_005337.1 + 41433 0.66 0.839386
Target:  5'- uGCCGAAcGUCGCguuGAGCagcuccaccgcgggaGCGCUGAUc- -3'
miRNA:   3'- gCGGUUU-CAGCG---CUCG---------------CGCGACUGuu -5'
25967 5' -56.4 NC_005337.1 + 97656 0.66 0.836043
Target:  5'- gCGCUc-GGUCGCGcGCGCGCUccaGGCc- -3'
miRNA:   3'- -GCGGuuUCAGCGCuCGCGCGA---CUGuu -5'
25967 5' -56.4 NC_005337.1 + 89767 0.66 0.836043
Target:  5'- cCGCCGcGAG-CGCGAguuGCGCGUcggUGACGc -3'
miRNA:   3'- -GCGGU-UUCaGCGCU---CGCGCG---ACUGUu -5'
25967 5' -56.4 NC_005337.1 + 80523 0.66 0.827554
Target:  5'- aCGCCGAGGccCG-GGGCGCGgaGAUg- -3'
miRNA:   3'- -GCGGUUUCa-GCgCUCGCGCgaCUGuu -5'
25967 5' -56.4 NC_005337.1 + 29777 0.66 0.827554
Target:  5'- gCGUCcGGGUgCGCGAGCGCGUa-GCAGc -3'
miRNA:   3'- -GCGGuUUCA-GCGCUCGCGCGacUGUU- -5'
25967 5' -56.4 NC_005337.1 + 131916 0.67 0.818881
Target:  5'- gGUCGAccGGUgcUGCG-GCGCGCUGGCc- -3'
miRNA:   3'- gCGGUU--UCA--GCGCuCGCGCGACUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.