miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25968 3' -55.3 NC_005337.1 + 133173 0.66 0.913373
Target:  5'- -cUC-CCGGCGgcgGCGCUGCGcCGGCu -3'
miRNA:   3'- cuAGcGGCCGUa--UGUGGUGCaGUCGu -5'
25968 3' -55.3 NC_005337.1 + 133173 0.66 0.913373
Target:  5'- -cUC-CCGGCGgcgGCGCUGCGcCGGCu -3'
miRNA:   3'- cuAGcGGCCGUa--UGUGGUGCaGUCGu -5'
25968 3' -55.3 NC_005337.1 + 17111 0.66 0.913373
Target:  5'- cGAgugCGcCCGGCAgaacuCGCCGcCGUCGuGCAu -3'
miRNA:   3'- -CUa--GC-GGCCGUau---GUGGU-GCAGU-CGU- -5'
25968 3' -55.3 NC_005337.1 + 58392 0.66 0.909723
Target:  5'- -cUCGCUGGUccagcggugcaugauGUACGCCAuCG-CGGCGg -3'
miRNA:   3'- cuAGCGGCCG---------------UAUGUGGU-GCaGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 46254 0.66 0.907241
Target:  5'- --gCGCCGGCAcauccUGCugACCAUGcgcgugCAGCAg -3'
miRNA:   3'- cuaGCGGCCGU-----AUG--UGGUGCa-----GUCGU- -5'
25968 3' -55.3 NC_005337.1 + 85947 0.66 0.907241
Target:  5'- --gCGcCCGGCucAUGCC-CGUCAGCGc -3'
miRNA:   3'- cuaGC-GGCCGuaUGUGGuGCAGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 3560 0.66 0.907241
Target:  5'- cGUCGCCGaGCG-ACACgGaguccgggccCGUCAGCGc -3'
miRNA:   3'- cUAGCGGC-CGUaUGUGgU----------GCAGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 46887 0.66 0.907241
Target:  5'- cGUCGCCaGCAUggacgugagauGgACCGCGUCAaggGCGa -3'
miRNA:   3'- cUAGCGGcCGUA-----------UgUGGUGCAGU---CGU- -5'
25968 3' -55.3 NC_005337.1 + 65213 0.66 0.907241
Target:  5'- --aCGCCGG---GCACCGCGUCcaggucguacccGGCGu -3'
miRNA:   3'- cuaGCGGCCguaUGUGGUGCAG------------UCGU- -5'
25968 3' -55.3 NC_005337.1 + 35232 0.66 0.907241
Target:  5'- aGGUCagGUCGGCGUACcUgGCGUcCAGCGc -3'
miRNA:   3'- -CUAG--CGGCCGUAUGuGgUGCA-GUCGU- -5'
25968 3' -55.3 NC_005337.1 + 9726 0.66 0.907241
Target:  5'- -cUCGCUGGCGagaUACGCgguCACGaCGGCGc -3'
miRNA:   3'- cuAGCGGCCGU---AUGUG---GUGCaGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 97898 0.66 0.905354
Target:  5'- -cUCGUCGGCGUACuccagccaggggccGCCGCccGUgGGCGu -3'
miRNA:   3'- cuAGCGGCCGUAUG--------------UGGUG--CAgUCGU- -5'
25968 3' -55.3 NC_005337.1 + 117327 0.66 0.900865
Target:  5'- gGAUCGCCgucacgguGGCG-ACgGCCaACGUCGGCc -3'
miRNA:   3'- -CUAGCGG--------CCGUaUG-UGG-UGCAGUCGu -5'
25968 3' -55.3 NC_005337.1 + 77818 0.66 0.900865
Target:  5'- gGGUCGCUGGCcaccauCACCGCG-CuGCc -3'
miRNA:   3'- -CUAGCGGCCGuau---GUGGUGCaGuCGu -5'
25968 3' -55.3 NC_005337.1 + 34589 0.66 0.900865
Target:  5'- aGGUCGCCGG-GUcCACCACGcccaGGCc -3'
miRNA:   3'- -CUAGCGGCCgUAuGUGGUGCag--UCGu -5'
25968 3' -55.3 NC_005337.1 + 111080 0.66 0.900865
Target:  5'- --cCGCgGGCGUgagguGCGCCAggcCGUcCAGCAg -3'
miRNA:   3'- cuaGCGgCCGUA-----UGUGGU---GCA-GUCGU- -5'
25968 3' -55.3 NC_005337.1 + 128763 0.66 0.900865
Target:  5'- --cCGCCGGCGcGCgaACCugGU-AGCAc -3'
miRNA:   3'- cuaGCGGCCGUaUG--UGGugCAgUCGU- -5'
25968 3' -55.3 NC_005337.1 + 45165 0.66 0.900865
Target:  5'- ---aGUCGGCAga-ACCGCGaCAGCGc -3'
miRNA:   3'- cuagCGGCCGUaugUGGUGCaGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 10969 0.66 0.900865
Target:  5'- -cUgGCCGGCGgauccgcGCAgCGCGUgCGGCAc -3'
miRNA:   3'- cuAgCGGCCGUa------UGUgGUGCA-GUCGU- -5'
25968 3' -55.3 NC_005337.1 + 63582 0.66 0.900214
Target:  5'- cGGUCGCCGGUgaggaacucgcccGUG-GCCAgGUcCAGCAc -3'
miRNA:   3'- -CUAGCGGCCG-------------UAUgUGGUgCA-GUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.