miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25968 3' -55.3 NC_005337.1 + 77818 0.66 0.900865
Target:  5'- gGGUCGCUGGCcaccauCACCGCG-CuGCc -3'
miRNA:   3'- -CUAGCGGCCGuau---GUGGUGCaGuCGu -5'
25968 3' -55.3 NC_005337.1 + 58392 0.66 0.909723
Target:  5'- -cUCGCUGGUccagcggugcaugauGUACGCCAuCG-CGGCGg -3'
miRNA:   3'- cuAGCGGCCG---------------UAUGUGGU-GCaGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 128763 0.66 0.900865
Target:  5'- --cCGCCGGCGcGCgaACCugGU-AGCAc -3'
miRNA:   3'- cuaGCGGCCGUaUG--UGGugCAgUCGU- -5'
25968 3' -55.3 NC_005337.1 + 117327 0.66 0.900865
Target:  5'- gGAUCGCCgucacgguGGCG-ACgGCCaACGUCGGCc -3'
miRNA:   3'- -CUAGCGG--------CCGUaUG-UGG-UGCAGUCGu -5'
25968 3' -55.3 NC_005337.1 + 46466 0.66 0.887392
Target:  5'- gGcgCGCCGGCGaGCuCC-CGggCAGCAg -3'
miRNA:   3'- -CuaGCGGCCGUaUGuGGuGCa-GUCGU- -5'
25968 3' -55.3 NC_005337.1 + 128491 0.66 0.894248
Target:  5'- -cUCGCgGGCGUGCGUCGCGUacguggucgcgCGGCu -3'
miRNA:   3'- cuAGCGgCCGUAUGUGGUGCA-----------GUCGu -5'
25968 3' -55.3 NC_005337.1 + 34589 0.66 0.900865
Target:  5'- aGGUCGCCGG-GUcCACCACGcccaGGCc -3'
miRNA:   3'- -CUAGCGGCCgUAuGUGGUGCag--UCGu -5'
25968 3' -55.3 NC_005337.1 + 17111 0.66 0.913373
Target:  5'- cGAgugCGcCCGGCAgaacuCGCCGcCGUCGuGCAu -3'
miRNA:   3'- -CUa--GC-GGCCGUau---GUGGU-GCAGU-CGU- -5'
25968 3' -55.3 NC_005337.1 + 40237 0.66 0.894248
Target:  5'- aGUCGUCGGCc-GCGCCGCG-CcGCGc -3'
miRNA:   3'- cUAGCGGCCGuaUGUGGUGCaGuCGU- -5'
25968 3' -55.3 NC_005337.1 + 100689 0.66 0.887392
Target:  5'- cGcgCGCgCGGCcgACGCgACG-CGGCGc -3'
miRNA:   3'- -CuaGCG-GCCGuaUGUGgUGCaGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 60304 0.66 0.894248
Target:  5'- gGGUCGUCGGC-UACcCC-CuUCAGCAg -3'
miRNA:   3'- -CUAGCGGCCGuAUGuGGuGcAGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 22892 0.66 0.880302
Target:  5'- --gUGCCGcGCGagcgGCACCGCGagcucuUCAGCGa -3'
miRNA:   3'- cuaGCGGC-CGUa---UGUGGUGC------AGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 60949 0.66 0.880302
Target:  5'- --gCGCCGGCAUGCG-CAUGg-GGCGc -3'
miRNA:   3'- cuaGCGGCCGUAUGUgGUGCagUCGU- -5'
25968 3' -55.3 NC_005337.1 + 6394 0.66 0.87813
Target:  5'- -cUCGCCGGCGccgcGCGCCACcagacugugcacgcaCAGCAg -3'
miRNA:   3'- cuAGCGGCCGUa---UGUGGUGca-------------GUCGU- -5'
25968 3' -55.3 NC_005337.1 + 132092 0.66 0.894248
Target:  5'- --cCGCC-GCcUGCGCCgugcGCGUCGGCGc -3'
miRNA:   3'- cuaGCGGcCGuAUGUGG----UGCAGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 93760 0.66 0.880302
Target:  5'- -cUCGCCGGUAgcgccaccacGCACCACGUgAucGCu -3'
miRNA:   3'- cuAGCGGCCGUa---------UGUGGUGCAgU--CGu -5'
25968 3' -55.3 NC_005337.1 + 56248 0.66 0.880302
Target:  5'- uGUCGCCGGCcgACgagGCCgACG-CGGUg -3'
miRNA:   3'- cUAGCGGCCGuaUG---UGG-UGCaGUCGu -5'
25968 3' -55.3 NC_005337.1 + 108994 0.66 0.880302
Target:  5'- --cCGCCGuGCGcgcgaacuccaGCGCCGCGUUGGCGg -3'
miRNA:   3'- cuaGCGGC-CGUa----------UGUGGUGCAGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 38717 0.66 0.894248
Target:  5'- cGUCGUccugaCGGgGgACACCgGCGUCGGCAa -3'
miRNA:   3'- cUAGCG-----GCCgUaUGUGG-UGCAGUCGU- -5'
25968 3' -55.3 NC_005337.1 + 89536 0.66 0.887392
Target:  5'- --aUGuuGGCGUAgUACCcCGUCAGCc -3'
miRNA:   3'- cuaGCggCCGUAU-GUGGuGCAGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.